PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR79499.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB

Protein Properties

Length: 279aa MW: 31741.2 Da PI: 7.3658

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR79499.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.4	1.1e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W+ +Ede+l ++k +G g W+ +++ g++R++k+c++rw++yl RWR79499.1 14 RGAWSVQEDEILSSYIKTHGEGKWRDMPKRAGLRRCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	52.7	9.9e-17	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ ++eE++l+++++k+lG++ W++Ia +++ gRt++++k++w++ RWR79499.1 67 RGNISPEEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110 7899****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence
MGRRPCCSKE SVNRGAWSVQ EDEILSSYIK THGEGKWRDM PKRAGLRRCG KSCRLRWLNY 60 LRPDIKRGNI SPEEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT SLRKRVKAQP 120 LSKTTIQDQT NSESKERRPS IGGPDKEPLT YIGPHQVIRA KAVRCTKLFL PPQQEGEPMS 180 QNDLELGPSE IQPLISPRKD DCLNFLMDFD MSGIFASEMI ESDCMMQVAG DEMNEKISNA 240 MGGEYGHHMA LSDVEIGDWR ESCSFQNGVG LELEMLGLF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G35550.1	3e-62	MYB family protein