PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR79500.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB

Protein Properties

Length: 284aa MW: 32364.5 Da PI: 6.1775

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR79500.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.2	5e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W+ +Ed +l ++k +G g W+ +++ g++R++k+c++rw++yl RWR79500.1 14 RGAWSVQEDRILTSYIKTHGEGKWRDLPKRAGLRRCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	51.2	2.9e-16	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ ++eE++l+ +++k+lG++ W++Ia +++ gRt++++k++w++ RWR79500.1 67 RGNISPEEEDLIFRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTC 111 7899****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence
MGRRPCCTKE GVNRGAWSVQ EDRILTSYIK THGEGKWRDL PKRAGLRRCG KSCRLRWLNY 60 LRPDIKRGNI SPEEEDLIFR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT CLSKRMKDYS 120 SKPHIQHHNN KKSQERRPST ETLDEPLTDS GPHQVIRTKA VRCTKVFLPP PQGEPMGQND 180 LDPGYNEIPP LISPSEDDCL NFLKDFDLEE IFVSDILNSD LIIQASGDNM QEKSNVTCGD 240 EAGPIPSSDP DDHLSFSEAL LDGWRESKFI QDGVDLELGM LDLP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47460.1	2e-61	MYB family protein