PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR79501.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB

Protein Properties

Length: 264aa MW: 29641.2 Da PI: 7.5547

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR79501.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.3	1.1e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W+ +Ed +l+d+++ +G g W +r+ g++R++k+c++rw++yl RWR79501.1 14 RGAWSVDEDRILYDYITTHGEGKWGVLPRRAGLRRCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	55.9	9.7e-18	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T++E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ RWR79501.1 67 RGNFTEDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNDIKNYWNT 110 89******************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence
MGRGASCSKE GVNRGAWSVD EDRILYDYIT THGEGKWGVL PRRAGLRRCG KSCRLRWLNY 60 LRPGIKRGNF TEDEEDLIIR LHKLLGNRWS LIAGRLPGRT DNDIKNYWNT KLRKKVKEHD 120 GEPQETESPS TIQSSVNASL GASSSHPMIR TKAKKFTKAS ILPQKLAQIT KENDPSGAEE 180 GAPLPSLQDQ DPWNYFMDLD GGEIIQPNSQ DSDYMNFFDG RMLENGVVRS GAWPSSSHSP 240 PFKEDTFESL GFSQLLALDV LDSQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G35550.1	6e-61	MYB family protein