PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR79542.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

C2H2

Protein Properties

Length: 495aa MW: 55842.9 Da PI: 8.8161

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR79542.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.8	9e-06	61	83	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H RWR79542.1 61 YVCEICSQGFQRDQNLQMHRRRH 83 9*********************9 PP
2	zf-C2H2	15.9	3.7e-05	138	160	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k H++t+ RWR79542.1 138 WVCEKCSKGYAVQSDYKAHLKTC 160 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 495 aa Download sequence
MFASPSPPQG NSPSYTIPSQ PLPCMDISRN SKRKRRPAGT PDPDAEVVRL SPKTLLESDR 60 YVCEICSQGF QRDQNLQMHR RRHKVPWKLL KRETLEVRKR VFVCPEPSCL HHDPCHALGD 120 LVGIKKHFRR KHSNHKQWVC EKCSKGYAVQ SDYKAHLKTC GTRGHTCDCG RVFSRVESFI 180 EHQDACVGRT QPELQAPRPA CLSRTASITS PSDGTNISAG TWQRWRLQKH TEAVFLLPNQ 240 IPSVTNLHHN NLELHLLPSS NSLSSTLNAS ISHNSGEKHD AQLHLSIGST SSDFNINTDP 300 DQSSQRSNEE SALVAMRLKE IANEQLCVAI SENALADEMR HQAMREIELA EKEFADAKRI 360 RQHAQMEIDK ARILKEHATK KINGALLQIT CHACKQQFQS TTLVSAPADE NSRHQLHIGC 420 NERRRRACSL LCGCYHLLIV CKDMVLMGDS SPLLMQDFIM GCLIVAVYYN HFEVKMLTSK 480 AVQLGKKGPL LDKRH

Sequence ? help Back to Top

Protein Sequence Length: 495 aa Download sequence

MFASPSPPQG NSPSYTIPSQ PLPCMDISRN SKRKRRPAGT PDPDAEVVRL SPKTLLESDR  60
YVCEICSQGF QRDQNLQMHR RRHKVPWKLL KRETLEVRKR VFVCPEPSCL HHDPCHALGD  120
LVGIKKHFRR KHSNHKQWVC EKCSKGYAVQ SDYKAHLKTC GTRGHTCDCG RVFSRVESFI  180
EHQDACVGRT QPELQAPRPA CLSRTASITS PSDGTNISAG TWQRWRLQKH TEAVFLLPNQ  240
IPSVTNLHHN NLELHLLPSS NSLSSTLNAS ISHNSGEKHD AQLHLSIGST SSDFNINTDP  300
DQSSQRSNEE SALVAMRLKE IANEQLCVAI SENALADEMR HQAMREIELA EKEFADAKRI  360
RQHAQMEIDK ARILKEHATK KINGALLQIT CHACKQQFQS TTLVSAPADE NSRHQLHIGC  420
NERRRRACSL LCGCYHLLIV CKDMVLMGDS SPLLMQDFIM GCLIVAVYYN HFEVKMLTSK  480
AVQLGKKGPL LDKRH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	32	37	KRKRRP
2	413	426	RHQLHIGCNERRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01940.1	1e-136	C2H2 family protein