PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR79595.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

TCP

Protein Properties

Length: 405aa MW: 45136.8 Da PI: 9.8515

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR79595.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	130.4	1.8e-40	114	267	4	135
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................ssssasec....eaessss 80 + rhski T++g+RdRR+Rls+++a++fF Lqd+LGfdk+skti WL++++k+ai elt+ +s+s+ e+ ++++ RWR79595.1 114 NRERHSKIFTAQGLRDRRMRLSVDVARKFFGLQDMLGFDKASKTIGWLMTKSKTAINELTKGlsqsdgcggdsdggdqnlTSESED-IsgldETTADVN 211 689********************************************************9888888888887777655333332.235555556666 PP TCP 81 sasnsssgkaaksaakskksqks.aasalnlakesrakarararertrekmriknk 135 +++n+ ++k+ +a+k +++q s +a+ akesra ara+arertrekm++k + RWR79595.1 212 QQENDLKQKSLVAAPKVNRNQGSkKATICPAAKESRAIARAKARERTREKMSKKLD 267 666666668888888665555550555566777****************99855 PP

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence
MFPFNHGKNC IPHSYDADQC LLGEQTFSRN EPTSSFNQFS PFLDHNSRFL NYEQELLSRH 60 LTKPPQMVST FTAITSMGNV GANNTEMAVL GTTQKMLFSK KSPPVAVGRK RSSNRERHSK 120 IFTAQGLRDR RMRLSVDVAR KFFGLQDMLG FDKASKTIGW LMTKSKTAIN ELTKGLSQSD 180 GCGGDSDGGD QNLTSESEDI SGLDETTADV NQQENDLKQK SLVAAPKVNR NQGSKKATIC 240 PAAKESRAIA RAKARERTRE KMSKKLDKSK QLPNGSTHGP YRLKPLSPLG FPRESSSRFS 300 HDKKSFELGG EINEPNKLGL STYDYYQHIS NSQGENNSGL VSFNNNGMMT FFPENWDMSS 360 TRTRFSCCDT PSMHLFTGKT HERITGLLLF KLPSANLFPD IPCLS

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence

MFPFNHGKNC IPHSYDADQC LLGEQTFSRN EPTSSFNQFS PFLDHNSRFL NYEQELLSRH  60
LTKPPQMVST FTAITSMGNV GANNTEMAVL GTTQKMLFSK KSPPVAVGRK RSSNRERHSK  120
IFTAQGLRDR RMRLSVDVAR KFFGLQDMLG FDKASKTIGW LMTKSKTAIN ELTKGLSQSD  180
GCGGDSDGGD QNLTSESEDI SGLDETTADV NQQENDLKQK SLVAAPKVNR NQGSKKATIC  240
PAAKESRAIA RAKARERTRE KMSKKLDKSK QLPNGSTHGP YRLKPLSPLG FPRESSSRFS  300
HDKKSFELGG EINEPNKLGL STYDYYQHIS NSQGENNSGL VSFNNNGMMT FFPENWDMSS  360
TRTRFSCCDT PSMHLFTGKT HERITGLLLF KLPSANLFPD IPCLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	6e-24	TCP family protein