PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR79596.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

TCP

Protein Properties

Length: 199aa MW: 21543.2 Da PI: 9.879

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR79596.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	98.9	9.4e-31	1	136	22	135
TCP 22 vRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................ssssasec....eaesssssasnsssgkaaksaaksk 98 +Rls+++a++fF Lqd+LGfdk+skti WL++++k+ai elt+ +s+s+ e+ +++++++n+ ++k+ +a+k + RWR79596.1 1 MRLSVDVARKFFGLQDMLGFDKASKTIGWLMTKSKTAINELTKGlsqsdgcggdsdggdqnlTSESED-IsgldETTADVNQQENDLKQKSLVAAPKVN 98 8****************************************9888888888887777654333332.235555555566666666667777777665 PP TCP 99 ksqksaa.salnlakesrakarararertrekmriknk 135 ++q s++ + akesra ara+arertrekm++k + RWR79596.1 99 RNQGSKKvAICPAAKESRAIARAKARERTREKMSKKLD 136 555555404566677****************99865 PP

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence
MRLSVDVARK FFGLQDMLGF DKASKTIGWL MTKSKTAINE LTKGLSQSDG CGGDSDGGDQ 60 NLTSESEDIS GLDETTADVN QQENDLKQKS LVAAPKVNRN QGSKKVAICP AAKESRAIAR 120 AKARERTREK MSKKLDKSKQ LPNGSTHGPY GLKPLSPLGF PRESSSRISH DKKSFELGGD 180 INEPNKLGIS TYDLLPTTS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	2e-15	TCP family protein