PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR79883.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

M-type_MADS

Protein Properties

Length: 162aa MW: 17732.4 Da PI: 10.528

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR79883.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	62.6	4.5e-20	11	57	3	49
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +++k nr vtfskRr+g++KKA+ LS+LC+ e+a++ fs gk + + RWR79883.1 11 VQDKQNRMVTFSKRRQGLFKKAKKLSILCGCEIAIVTFSGAGKAFSF 57 5799*************************************998776 PP
2	SRF-TF	54	2.1e-17	87	126	10	49
HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 tfskRr+ ++KKA+ELS+LC+ e+a++ f g+l+++ RWR79883.1 87 MATFSKRRQSLFKKAQELSILCGCEIAIVTFDGAGNLFTF 126 46*************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence
MGKRKREIEL VQDKQNRMVT FSKRRQGLFK KAKKLSILCG CEIAIVTFSG AGKAFSFGSP 60 DPDTVIRRYL TNTSIPSSIK DHPKDQMATF SKRRQSLFKK AQELSILCGC EIAIVTFDGA 120 GNLFTFGLPD TDTPSSAATS ATHPSPPPQS KTISASPNTS WM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	3	33	KRKREIELVQDKQNRMVTFSKRRQGLFKKAK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34440.1	6e-23	M-type_MADS family protein