PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR79914.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

bHLH

Protein Properties

Length: 572aa MW: 62005.9 Da PI: 6.7194

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR79914.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.8	9.6e-09	390	437	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq RWR79914.1 390 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 437 8***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 572 aa Download sequence
MEKEKLSSNH SSTRPLSYIN SAPPNWKSSS GMDAQLGELS FLQEQLPSCL FNLNWENSMD 60 QSVPFESALS SIVSSPTASN AAHASAMFRE VIGRLGCISN SGEISPTSQT LGGSSNSYIG 120 GNNNSTNTSC YSTPLNSPPK LNLSMMDQQL RGNLPISGNS IAPHPSFVPL STDPGFSERA 180 AKFSYFSSRN LGTLAGQFGL PEPELPYRSV TRAESGKLSR VSSSQSLKAG SQMTLLENKE 240 IPLQDGIGSE RKVSRLPRPS TPDNTEFSNA REEESSNSGQ NTGGESVSRC PNESSGRKRK 300 AAPKSKLNDL PSSPAAKDAK AMEDDGSNAK RCKPAEATGD DQVKPRGEVN SSGDAVEDGK 360 KQSKENLRPP EPPKQDYIHV RARRGQATDS HSLAERVRRE KISERMKFLQ DLVPGCNKVT 420 GKAVMLDEII NYVQSLQRQV EFLSMKLATI NPRLDLNMDA LLSKDILQSR GPLSHTMYPF 480 DSSAATYSYG HQPQQGPLTS IVSNGSDTQC SVNPLDATLR RALSMQMPTI DGFIDASQLS 540 SIWDDDLQSV VQMSFGQNQE TALPTQNFHG SN

Sequence ? help Back to Top

Protein Sequence Length: 572 aa Download sequence

MEKEKLSSNH SSTRPLSYIN SAPPNWKSSS GMDAQLGELS FLQEQLPSCL FNLNWENSMD  60
QSVPFESALS SIVSSPTASN AAHASAMFRE VIGRLGCISN SGEISPTSQT LGGSSNSYIG  120
GNNNSTNTSC YSTPLNSPPK LNLSMMDQQL RGNLPISGNS IAPHPSFVPL STDPGFSERA  180
AKFSYFSSRN LGTLAGQFGL PEPELPYRSV TRAESGKLSR VSSSQSLKAG SQMTLLENKE  240
IPLQDGIGSE RKVSRLPRPS TPDNTEFSNA REEESSNSGQ NTGGESVSRC PNESSGRKRK  300
AAPKSKLNDL PSSPAAKDAK AMEDDGSNAK RCKPAEATGD DQVKPRGEVN SSGDAVEDGK  360
KQSKENLRPP EPPKQDYIHV RARRGQATDS HSLAERVRRE KISERMKFLQ DLVPGCNKVT  420
GKAVMLDEII NYVQSLQRQV EFLSMKLATI NPRLDLNMDA LLSKDILQSR GPLSHTMYPF  480
DSSAATYSYG HQPQQGPLTS IVSNGSDTQC SVNPLDATLR RALSMQMPTI DGFIDASQLS  540
SIWDDDLQSV VQMSFGQNQE TALPTQNFHG SN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	3e-85	bHLH family protein