PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR80060.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family M-type_MADS
Protein Properties Length: 257aa    MW: 28444.5 Da    PI: 4.5944
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR80060.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF29.41e-0940721850
                HHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF 18 ngilKKAeELSvLCdaevaviifsstgklyeys 50
                +g++KKA+ELS   + e+a+i fs  gk++++ 
  RWR80060.1 40 AGLFKKAQELSKFSGCEIAIIAFSGVGKFFTFG 72
                79*****************************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    
MPLKIRKGRE SSRTLLPPPV LPTQLPPVPR QRRFGARSGA GLFKKAQELS KFSGCEIAII  60
AFSGVGKFFT FGSSDFDHII SRYLSITTTS TFTSPVKGLQ VECQPPNHLE HHVMEVSNQE  120
FEQENLFISQ THQMVSSSSS ITTAELPPTV PEHSSEHDLT GVHPWNGWDQ FYSQFDERGG  180
EEWNECGFDI GPASAPTFFQ SVQEDEQYPS GSSFFQPAEE GYGCGLPSFH SLTPNQADEG  240
AILPFDDGGY GFESSWL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.12e-08MIKC_MADS family protein