PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR80185.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family Whirly
Protein Properties Length: 258aa    MW: 29040.2 Da    PI: 9.9322
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR80185.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly212.44.5e-66812191139
      Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePl 99 
                 s+yk+kaal++++++p+f+aldsg++kl+r+G +ll++a+a++ r+ydW++kq+f+ls+te++++++l++k+sceffhdp +++s+eGkvrk lk ePl
  RWR80185.1  81 SIYKGKAALTIDPRAPEFVALDSGAFKLSREGYVLLQFAPAVGLRQYDWSRKQVFSLSVTEIGTIMSLGAKDSCEFFHDPNKGKSEEGKVRKILKAEPL 179
                 7************************************************************************************************** PP

      Whirly 100 pdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                 pdGsG+f+nlsv+n l++++es+++Pv+kaef+vl+s+++
  RWR80185.1 180 PDGSGHFFNLSVQNRLLNVDESVYIPVTKAEFTVLISAFN 219
                 *************************************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    
MQLLSIQNPK TPYLLPQISL PYRFFSPKPS LFSAKFPRKL SLQCRRSEFF EQQQQFPRPL  60
DNSYSQKSVG APSGRVYVGY SIYKGKAALT IDPRAPEFVA LDSGAFKLSR EGYVLLQFAP  120
AVGLRQYDWS RKQVFSLSVT EIGTIMSLGA KDSCEFFHDP NKGKSEEGKV RKILKAEPLP  180
DGSGHFFNLS VQNRLLNVDE SVYIPVTKAE FTVLISAFNF ILPYLLGWHA FANSTKPDDS  240
ARSNNVNPRS GAELEWGR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14410.11e-111Whirly family protein