PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR80319.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family NF-YC
Protein Properties Length: 168aa    MW: 18974 Da    PI: 4.7302
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR80319.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC33.59.3e-11691531699
       NF-YC  16 fknhelPlarikkilkadedvkm.isaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                 + n ++P++rik+++k +  ++   + e   l+ ka e f+  ++  ++  a   ++++l+   ++++vt+ + ++fl d vp++
  RWR80319.1  69 YSNCSFPMSRIKRLMKNEGVLHFrTTPEFVFLINKATEQFLELFAEDAYACAVRERKKSLNYEHLSSVVTKEKRYEFLSDFVPEK 153
                 67899***********9988875256789999********8888899***********************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    
MGEREIIQLV SSSSASDERD EEGGGGGGEE EEGEEDCMLS TNNTNKDENK EEDKREKSIR  60
GGVGRGPSYS NCSFPMSRIK RLMKNEGVLH FRTTPEFVFL INKATEQFLE LFAEDAYACA  120
VRERKKSLNY EHLSSVVTKE KRYEFLSDFV PEKVRAKDAL SVKSLNES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.18e-27NF-YC family protein