PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR80337.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

YABBY

Protein Properties

Length: 179aa MW: 20330 Da PI: 7.4701

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR80337.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	210.3	6.7e-65	2	153	2	170
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssek 100 +v+ s e++Cyv+Cn CntilavsvP++ +f++vtvrCGhC+ llsvn++ + q+ + ++ ++++n++s+++ +e+ s+s+++++ RWR80337.1 2 SVDVSCERMCYVHCNLCNTILAVSVPYSNMFNIVTVRCGHCAYLLSVNMSSMIQTFPFQD---------------FQHQNFSSQDSDKECGSSSKTNKM 85 678899********************************************99999988...............477899999999999999999977 PP YABBY 101 lsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 l++ ++++ pr+ p irPPekrqrvPsayn+fikeeiqrikasnPdishreafs+aaknWahfP+ihfgl RWR80337.1 86 LDS-TEDDQPRILP-IRPPEKRQRVPSAYNKFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 153 755.5567799999.9**************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence
MSVDVSCERM CYVHCNLCNT ILAVSVPYSN MFNIVTVRCG HCAYLLSVNM SSMIQTFPFQ 60 DFQHQNFSSQ DSDKECGSSS KTNKMLDSTE DDQPRILPIR PPEKRQRVPS AYNKFIKEEI 120 QRIKASNPDI SHREAFSTAA KNWAHFPHIH FGLTIDGNKQ VKVDEPFAGE GAQKTQGFY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	3e-78	YABBY family protein