PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR80348.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

FAR1

Protein Properties

Length: 785aa MW: 90689.3 Da PI: 7.494

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR80348.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	87.1	2.5e-27	76	166	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 fY +YA++ GF r+s+ + sk nge ++r+fvCsk+g+ ++++ +k+rr+r++trtgC+a+++v+k++ +gkw v k++++HnH+l RWR80348.1 76 FYYDYARRKGFLARISSFYCSKLNGEKISREFVCSKQGFYKNTDVPnGTKKRRKRPSTRTGCTAMMTVRKQDpSGKWFVVKFHKDHNHPLL 166 9***********************************998887654789999**********************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 785 aa Download sequence
MSYAQGNIME GPINQGNEFE EHQLGSEGES AECCTTLDVE PSVTNGDRRM EISAVSELAE 60 PYVGMEFDSE EDARAFYYDY ARRKGFLARI SSFYCSKLNG EKISREFVCS KQGFYKNTDV 120 PNGTKKRRKR PSTRTGCTAM MTVRKQDPSG KWFVVKFHKD HNHPLLSPNE MWRVRPRRRT 180 FDVKKRFADH LPEKRIRKLL ASSNADCSGQ SSMASNDNMK KRQRNFPGDC ETLLEYLKRK 240 QAENPAFFFA IDVDEKQSLT KVFWVDGRSR MAYDYFGDVV TIDTTYKTKR SRMPFATFTG 300 VNHHKQSVLF GCALLSDEST STFVWLFKTW LTSMNGRYPI SIVTDHDKAI RAAVAHVFPE 360 TNHRFCLWHI IRKQNEMLPH VVFAHPHFQE EFLNFVQQAE TIEEFESSWE KLLEKYMLKE 420 NEWLKSLYGD RQQWVPVYLR DKFFADLSTN QQSDNMNSFF DGYVDAQTTP QDFVTQYEKG 480 LNSRYEKEDE DYLTLDTLPV LCTRSTVEKQ AASIYTKRVF ETFQEEILEE CNYSVDKIDD 540 DGATNVYKVA RFDQERKAQT VTFNIAEMRA HCSCKKFEFS GILCRHVLAV FRVTNIFTIP 600 SHYILKRWTK NANNEVVLDQ YGIEVQANYN ERTMLRYNIL CREALKFIED AAQSADVFNV 660 AMGSIRDTAK KVNAAKEIVA RAEKMGIDGT MYEDNFNVEV EANALAIQET LQDPEYFRIK 720 RQASTSRLRS ASEKSSFKSP ACSLCKGPKH NIRSCPRAAN VSTEQINQGH ASIFVQDGTQ 780 NTILQ

Sequence ? help Back to Top

Protein Sequence Length: 785 aa Download sequence

MSYAQGNIME GPINQGNEFE EHQLGSEGES AECCTTLDVE PSVTNGDRRM EISAVSELAE  60
PYVGMEFDSE EDARAFYYDY ARRKGFLARI SSFYCSKLNG EKISREFVCS KQGFYKNTDV  120
PNGTKKRRKR PSTRTGCTAM MTVRKQDPSG KWFVVKFHKD HNHPLLSPNE MWRVRPRRRT  180
FDVKKRFADH LPEKRIRKLL ASSNADCSGQ SSMASNDNMK KRQRNFPGDC ETLLEYLKRK  240
QAENPAFFFA IDVDEKQSLT KVFWVDGRSR MAYDYFGDVV TIDTTYKTKR SRMPFATFTG  300
VNHHKQSVLF GCALLSDEST STFVWLFKTW LTSMNGRYPI SIVTDHDKAI RAAVAHVFPE  360
TNHRFCLWHI IRKQNEMLPH VVFAHPHFQE EFLNFVQQAE TIEEFESSWE KLLEKYMLKE  420
NEWLKSLYGD RQQWVPVYLR DKFFADLSTN QQSDNMNSFF DGYVDAQTTP QDFVTQYEKG  480
LNSRYEKEDE DYLTLDTLPV LCTRSTVEKQ AASIYTKRVF ETFQEEILEE CNYSVDKIDD  540
DGATNVYKVA RFDQERKAQT VTFNIAEMRA HCSCKKFEFS GILCRHVLAV FRVTNIFTIP  600
SHYILKRWTK NANNEVVLDQ YGIEVQANYN ERTMLRYNIL CREALKFIED AAQSADVFNV  660
AMGSIRDTAK KVNAAKEIVA RAEKMGIDGT MYEDNFNVEV EANALAIQET LQDPEYFRIK  720
RQASTSRLRS ASEKSSFKSP ACSLCKGPKH NIRSCPRAAN VSTEQINQGH ASIFVQDGTQ  780
NTILQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	125	129	KKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1 family protein