PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR80361.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family NF-YC
Protein Properties Length: 251aa    MW: 28069.8 Da    PI: 5.5495
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR80361.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC178.85.1e-56681711101
       NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 
                 ql++fw++q   ie++tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdflvdiv
  RWR80361.1  68 QLQMFWSTQfqeIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIV 166
                 89*****999999************************************************************************************** PP

       NF-YC  97 prdel 101
                 pr+el
  RWR80361.1 167 PREEL 171
                 **987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    
MDQQGHGQPP VMGVVSGAAQ IQYGAPSYQA NQMMGPTPGS VGTPAQLAQH QLAYQHMHQQ  60
QQQQLQQQLQ MFWSTQFQEI EQTTDFKNHS LPLARIKKIM KADEDVRMIS AEAPVIFARA  120
CEMFILELTL RSWNHTEENK RRTLQKNDIA AAITRTDIFD FLVDIVPREE LKDEVLGSIP  180
RAGALPVGGP ADAIPYYYAP QVGAPGLIMG KPVMDQSLYV QQAGTYIPQQ MWQQPQHQQE  240
AGKQQQSGDD S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141147RRTLQKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.32e-79NF-YC family protein