PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR80601.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

LSD

Protein Properties

Length: 143aa MW: 14964.3 Da PI: 7.9297

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR80601.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	41.5	2.2e-13	27	51	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr++L+YP GA+sV+Ca+C++V RWR80601.1 27 CSGCRNVLAYPHGATSVCCAVCNAV 51 ************************9 PP
2	zf-LSD1	36.6	7.3e-12	66	90	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC++ L Y rGA+sV+C++C+tV RWR80601.1 66 CGGCHIHLTYMRGATSVQCSCCHTV 90 ************************9 PP
3	zf-LSD1	44.5	2.6e-14	104	128	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+CrtlL+Y +GA+sV+Ca+C++V RWR80601.1 104 CGNCRTLLMYQYGARSVKCAVCNFV 128 ***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence
MPVPLAPYPT PPAPFTPPNG VQSQLVCSGC RNVLAYPHGA TSVCCAVCNA VTTVPPPGTE 60 MAQLVCGGCH IHLTYMRGAT SVQCSCCHTV NLALEANQVA HVNCGNCRTL LMYQYGARSV 120 KCAVCNFVTS VGASTSTELK FNN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.3	6e-62	LSD family protein