PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR80633.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

HD-ZIP

Protein Properties

Length: 258aa MW: 29006.8 Da PI: 8.1534

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR80633.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.7	4.2e-18	106	160	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq +Lee F+++ +++ +++ L+k+l+L rqV vWFqNrRa+ k RWR80633.1 106 RKKLRLSKEQSAVLEESFKEHTTLNPKQKLALSKQLNLRPRQVEVWFQNRRARTK 160 788899***********************************************98 PP
2	HD-ZIP_I/II	123	1.5e-39	106	195	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlskeq+++LEesF+e+++L+p++K +l+++L+l+prqv+vWFqnrRARtk+kq+E+d+e +kr++++lkeen+rL+kev+eLr +l RWR80633.1 106 RKKLRLSKEQSAVLEESFKEHTTLNPKQKLALSKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELMKRCCESLKEENRRLQKEVQELR-AL 195 69*************************************************************************************9.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence
MLVEKEDLGL SLSLRSSSSE NRHPLQMNLM AWNDLFASTE RSSETIRPFL KGIDVNRKPS 60 TADCEDEAGI SSPNSTVSSV SGKRSEREPS GGDGMSDDED GGETSRKKLR LSKEQSAVLE 120 ESFKEHTTLN PKQKLALSKQ LNLRPRQVEV WFQNRRARTK LKQTEVDCEL MKRCCESLKE 180 ENRRLQKEVQ ELRALKLSPH LYMHMTPPTT LTLCPSCERV AANVSDQAAP HRHHAPISIS 240 PWAQPAAPFI RALDVAPH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	105	111	SRKKLRL
2	155	163	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16780.1	5e-76	HD-ZIP family protein