PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR80634.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB

Protein Properties

Length: 346aa MW: 39213 Da PI: 5.0527

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR80634.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.3	1.8e-13	14	59	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+W +eEde+l d+v+++G+++W++I ++ + Rt+k+c++rw + RWR80634.1 14 KGPWMAEEDEILMDYVNKYGPRDWSAIRSKGLLPRTGKSCRLRWVN 59 79***********************8876677********87 PP
2	Myb_DNA-binding	43.6	6.6e-14	70	110	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++++eE+ +d+ +q+G++ W++Ia +++ gRt++++k++w RWR80634.1 70 KFSAEEERVVIDLQAQFGNK-WARIATYLP-GRTDNDVKNFWS 110 79****************.*****.*********5 PP

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence
MEGRRRDDGM AIRKGPWMAE EDEILMDYVN KYGPRDWSAI RSKGLLPRTG KSCRLRWVNK 60 LKPDLKTGCK FSAEEERVVI DLQAQFGNKW ARIATYLPGR TDNDVKNFWS TRQKRLARIL 120 QTSSPPKSNK NHSKLPVFHC ESQALEVAAA IASDEQSTAH PIKEATSNDK DSSKSESGSC 180 EDSALCSMPF QEESSNGQCG EPMYSLGNSD VIKMVPLPDL INPNLLNLET NLQAPDEFIR 240 LDKKPCLDPS LQFPPTHFPQ QPLDIPPLSW SHDLSTGFID ASFLDIYRDA SEKDLQFPFE 300 LPFTPLEVNH HCTKRQDNDL TTPDSFFHDF PTDMFDHLEP LPNSSE

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence

MEGRRRDDGM AIRKGPWMAE EDEILMDYVN KYGPRDWSAI RSKGLLPRTG KSCRLRWVNK  60
LKPDLKTGCK FSAEEERVVI DLQAQFGNKW ARIATYLPGR TDNDVKNFWS TRQKRLARIL  120
QTSSPPKSNK NHSKLPVFHC ESQALEVAAA IASDEQSTAH PIKEATSNDK DSSKSESGSC  180
EDSALCSMPF QEESSNGQCG EPMYSLGNSD VIKMVPLPDL INPNLLNLET NLQAPDEFIR  240
LDKKPCLDPS LQFPPTHFPQ QPLDIPPLSW SHDLSTGFID ASFLDIYRDA SEKDLQFPFE  300
LPFTPLEVNH HCTKRQDNDL TTPDSFFHDF PTDMFDHLEP LPNSSE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60460.1	1e-64	MYB family protein