PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR80646.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

bHLH

Protein Properties

Length: 435aa MW: 48153.5 Da PI: 8.6256

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR80646.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.3	4.2e-16	263	309	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRdriN+++ +L++l+P++ K +Ka++L +++eY+k+Lq RWR80646.1 263 VHNQSERKRRDRINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 309 6***********************8.....7****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence
MSQRVPSWGL EQRNNSTKLD FHAHPSANSS SLFGYGVTEL AWENGQLAMH GLGPPPPPPP 60 STRPLSNRCP WDKPRAGGTL ESIIDQAAFL PLHKEGDELL PLLKCHHRST AIDALVPLSN 120 RTRSVDGDGD DDDEESTRVP DPHQTRGAFS RGGEVERIEA AAAWRRKRRR VAEEAGSMSA 180 SASASWHVTK DTYEVDLEVS LGSHEPTSLG KSMSSHTRTA TIDDHDSVSN HSRAQRLQGG 240 GEDKKRRMDG FSIPTKRNKA AAVHNQSERK RRDRINQRMK TLQKLVPNSS KTDKASMLDE 300 VIEYLKQLQA QVQMMSKMSC IPQLMMPMSM QQLQMSMMAQ MSMMGVMDMN RLHQTSHAAA 360 VPPMLHPAAF FPLTAAWDGS GDRLPTPGSF LPDPLSMAFL SCQTQPYSLD AYNRMAALYQ 420 QLHQSTGIVP TIPKT

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence

MSQRVPSWGL EQRNNSTKLD FHAHPSANSS SLFGYGVTEL AWENGQLAMH GLGPPPPPPP  60
STRPLSNRCP WDKPRAGGTL ESIIDQAAFL PLHKEGDELL PLLKCHHRST AIDALVPLSN  120
RTRSVDGDGD DDDEESTRVP DPHQTRGAFS RGGEVERIEA AAAWRRKRRR VAEEAGSMSA  180
SASASWHVTK DTYEVDLEVS LGSHEPTSLG KSMSSHTRTA TIDDHDSVSN HSRAQRLQGG  240
GEDKKRRMDG FSIPTKRNKA AAVHNQSERK RRDRINQRMK TLQKLVPNSS KTDKASMLDE  300
VIEYLKQLQA QVQMMSKMSC IPQLMMPMSM QQLQMSMMAQ MSMMGVMDMN RLHQTSHAAA  360
VPPMLHPAAF FPLTAAWDGS GDRLPTPGSF LPDPLSMAFL SCQTQPYSLD AYNRMAALYQ  420
QLHQSTGIVP TIPKT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	166	170	RKRRR
2	167	171	KRRRV
3	268	273	ERKRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	6e-71	bHLH family protein