PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR80648.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

C2H2

Protein Properties

Length: 310aa MW: 34377.8 Da PI: 6.293

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR80648.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00021	5	26	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C+++Fs+ L H+r+H RWR80648.1 5 TCKLCNRTFSNGRALGGHMRSH 26 6********************9 PP
2	zf-C2H2	12.4	0.00048	197	219	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F++ L H +H RWR80648.1 197 FQCETCKKVFRSYQALGGHRASH 219 89**********99999998887 PP
3	zf-C2H2	13.3	0.00025	249	271	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C ++Fs+ L H r+H RWR80648.1 249 HQCPICFRVFSSGQALGGHRRSH 271 79*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence
MEKRTCKLCN RTFSNGRALG GHMRSHMTLL SPSQKPQQPQ NDYPSSSSSS SASSSSEEDE 60 NHKPPNYGLR ENPQKSFRFA DPEFSFALDA SSVVQDRESE TESPHLPHRS RRSKRHRVSP 120 IPNPKPDTEP EPLSSVSDAT TEEDVALCLM MLSRDIWMRD GRAEDESQDS KAEEEEEEEE 180 EYDESKLKTC TKGRSRFQCE TCKKVFRSYQ ALGGHRASHK KIRGCSTDVV RAQVADSDAG 240 AGEERRKTHQ CPICFRVFSS GQALGGHRRS HLSAAPPAAL PKLADNSIDL NLPAPVEDDD 300 MSAVSDAGAK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45120.1	2e-50	C2H2 family protein