PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR80658.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family GRAS
Protein Properties Length: 780aa    MW: 84229.9 Da    PI: 6.0767
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR80658.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS341.31.6e-1044127791374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                 lv++L+++Ae v+sg++  a+++Larl+++ s  g+p+qR+a+yf+eAL   l   +++++ ++l++s+++  +++ +++a+k+fse+sP+l+f ++t 
  RWR80658.1 412 LVDQLYKAAELVESGNFGHAREILARLNHQLSHVGKPLQRAAFYFKEALLLLLKTaTTPGCNSTLASSASP-LDVVFKISAYKVFSEISPFLQFVNFTS 509
                 6899*************************************************997788888888777775.89************************* PP

        GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                 Nq +lea++g +r+HiiDfdi+ G+QW++++q+La R +g+p+l+iT+++sp+s++  el+ t+e+L++fA+ l+++f+fnv+  +++++ ++ +L  +
  RWR80658.1 510 NQVLLEALDGFDRIHIIDFDIGIGGQWASFMQELAMRLGGTPTLKITAFASPSSHHPLELNLTQENLTHFANGLNISFQFNVINIDAIDTSTIMSLGAS 608
                 ***********************************************************************************9999999988888555 PP

        GRAS 198 p......gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerikvErel 289
                        +Ea+aVn+ +   +l+         ++ +L++vk++sPk+vv v++ + +++ +F ++fl+al+ ys+lfdsl ++++  +se+  k+Er l
  RWR80658.1 609 AilnlsdNEAIAVNFPVGSTNLP---------IPLLLRMVKQVSPKIVVSVDHGCVRSDFPFPQHFLHALQSYSVLFDSLdAVNANLNSEAVYKIERSL 698
                 5555555**********999997.........577*********************************************77788888899******** PP

        GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 l+++i++vv  ++++     e++  Wr+ +++aGF+p+p+s+++++q ++++r+ +++g++ve++++sl+l+W++ +L svSaWr
  RWR80658.1 699 LQPRIESVVLGRHQA----GEKMLPWRALFNSAGFSPLPFSNFTETQGEYMVRRLQGRGFHVEKRQASLYLYWQSGELCSVSAWR 779
                 **********99888....999**************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 780 aa     Download sequence    
MRVVPFHLQG KGVLDLDVAA DFSGLVPAKW KKEGLFGSTE PTSVLEQRRS PSPQTSTSIL  60
STSLGGSSGS TDTAGVAAVS GNPLHQWPPS QDDSSAGAAA AGTDGGRKEA WAPELQPVPT  120
PLEMSSAGGG GGEKCGGGGG GFGMEEWENM LSESSEVSPG NDHSFFRWFM GDVDDPSLKQ  180
LLQTGGGGPS EFEGGVPGYC VAEPGLGFEG GVSAPGNVNL SSIAPPLAAS TAATDFALNS  240
SNPLSNLKSP FFGGNNNNTP QNPIFSAATS NALPLSLPLS MPQGAFYQQQ QQQFEGIDEK  300
PQVFNLQNQQ QANPPPPHHH HQNPAFLLPF SYTQQEQQHL LPPQPKRHHP TVIGPSCQFP  360
KTPFADSGQE LLLQRPPPQS FVNEHLIPDH LQKRQAKMKV VGSLENANQQ ALVDQLYKAA  420
ELVESGNFGH AREILARLNH QLSHVGKPLQ RAAFYFKEAL LLLLKTATTP GCNSTLASSA  480
SPLDVVFKIS AYKVFSEISP FLQFVNFTSN QVLLEALDGF DRIHIIDFDI GIGGQWASFM  540
QELAMRLGGT PTLKITAFAS PSSHHPLELN LTQENLTHFA NGLNISFQFN VINIDAIDTS  600
TIMSLGASAI LNLSDNEAIA VNFPVGSTNL PIPLLLRMVK QVSPKIVVSV DHGCVRSDFP  660
FPQHFLHALQ SYSVLFDSLD AVNANLNSEA VYKIERSLLQ PRIESVVLGR HQAGEKMLPW  720
RALFNSAGFS PLPFSNFTET QGEYMVRRLQ GRGFHVEKRQ ASLYLYWQSG ELCSVSAWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-102GRAS family protein