PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR80668.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

YABBY

Protein Properties

Length: 211aa MW: 23241.4 Da PI: 7.5308

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR80668.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	234.2	3.1e-72	10	174	2	170
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssek 100 d+ seq+Cyv+Cn C t+lavsvP +sl+k+vtvrCGhCtsllsvn +++ ll+a ++l s++++ l ++ e++ + +++ ++++ s + RWR80668.1 10 DHLPPSEQLCYVHCNICGTVLAVSVPCSSLYKTVTVRCGHCTSLLSVN--MRTLLLPAANQL--SFNHSFLSASHNLLEETPTLPQSSLLNQSNPSETV 104 577899**************************************66..566778888875..34444444433333444444444444444445556 PP YABBY 101 lsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +s+ + +e p++pp++rPPekrqrvPsaynrfik+eiqrika+nPdi+hreafsaaaknWahfP+ihfgl RWR80668.1 105 MSTLRMDEPPKAPPINRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSAAAKNWAHFPHIHFGL 174 78899999**********************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence
MSSSSPFSLD HLPPSEQLCY VHCNICGTVL AVSVPCSSLY KTVTVRCGHC TSLLSVNMRT 60 LLLPAANQLS FNHSFLSASH NLLEETPTLP QSSLLNQSNP SETVMSTLRM DEPPKAPPIN 120 RPPEKRQRVP SAYNRFIKDE IQRIKAGNPD ITHREAFSAA AKNWAHFPHI HFGLLPPEQG 180 VKKTSVCQQE GEDGLINDGF FSTANMGITP Y

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	4e-87	YABBY family protein