PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR80684.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

C2H2

Protein Properties

Length: 485aa MW: 54990.5 Da PI: 8.3934

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR80684.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.00019	238	261	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C Cg+ F +++ L++H + H RWR80684.1 238 YICRVCGRKFHTNEKLVNHFKQlH 261 89*****************98766 PP

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence
MSSQPDPFYI KPSGSQIPTQ GFEKPGFRWL KKTSIIKPEE EEEEEEEATT GRMHSHSESA 60 TASTVVGDRN TVLFLQISFF EFIPNCLCIG FVSFSFHIKK GGEEREHIGM VTYLRFVIPF 120 QFKSPSSHIH AFSLSRLFHY GLDGGFCHDP CSTKRTAENN VAIFWDLDNK PPSSFPPYDA 180 AVRLKLAASS FGAVRYMVAY ANRHAFSYVP PIVRDQRKER KALDRLETKG VIKPAEPYIC 240 RVCGRKFHTN EKLVNHFKQL HEREQIKRLN RLESARGKQR VQLAAKFSMK MEKYKKAVNG 300 VLTPKVGYGL ADELKRAGFW VRTVSDKPQA ADTALRNHMV DMMDRQCVGC LVLVSDDSDF 360 VDVLKEARLR CLRTVVVGDN NDGALKRCAD TGFSWTDITA GKAKKEAVSV VGRWRDRDIL 420 KKLEWTYKPE VKKSEYDPNG SEVKSENGDI EDTIFEGDSL AWKEDAGPWW ELESDTEGTA 480 ASFKG

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence

MSSQPDPFYI KPSGSQIPTQ GFEKPGFRWL KKTSIIKPEE EEEEEEEATT GRMHSHSESA  60
TASTVVGDRN TVLFLQISFF EFIPNCLCIG FVSFSFHIKK GGEEREHIGM VTYLRFVIPF  120
QFKSPSSHIH AFSLSRLFHY GLDGGFCHDP CSTKRTAENN VAIFWDLDNK PPSSFPPYDA  180
AVRLKLAASS FGAVRYMVAY ANRHAFSYVP PIVRDQRKER KALDRLETKG VIKPAEPYIC  240
RVCGRKFHTN EKLVNHFKQL HEREQIKRLN RLESARGKQR VQLAAKFSMK MEKYKKAVNG  300
VLTPKVGYGL ADELKRAGFW VRTVSDKPQA ADTALRNHMV DMMDRQCVGC LVLVSDDSDF  360
VDVLKEARLR CLRTVVVGDN NDGALKRCAD TGFSWTDITA GKAKKEAVSV VGRWRDRDIL  420
KKLEWTYKPE VKKSEYDPNG SEVKSENGDI EDTIFEGDSL AWKEDAGPWW ELESDTEGTA  480
ASFKG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12240.1	1e-131	C2H2 family protein