PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR80772.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family HD-ZIP
Protein Properties Length: 801aa    MW: 87505.7 Da    PI: 5.6794
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR80772.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.29.2e-21107162156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++ +++t++q++eLe+lF+++++p++++r eL+++l+L+ rqVk+WFqNrR+++k
  RWR80772.1 107 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSRRLSLESRQVKFWFQNRRTQMK 162
                 688999***********************************************999 PP
2START198.82.4e-623105331205
                 HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
       START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                 ela++ ++el+k+++ +ep+Wv s     e +n++e++ +f++  +     + +ea+r+ g+ +  +  lve+l+d + +W e+++    +a+t++vis
  RWR80772.1 310 ELALASMDELLKMVQTDEPLWVPSLdsgkETLNYEEYMCTFPRCIGpkpvgFVTEASRDRGIIIVSSGPLVETLMDAN-RWAEMFPcliaRASTTDVIS 407
                 57899********************99**************99998********************************.******************** PP

                 TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS
       START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178
                 sg      g++qlm aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d  ++ p+ ss+  +++lpSg+++++++ng+skvtwveh+++++  +h
  RWR80772.1 408 SGmggtrnGTIQLMRAELQVLSPLVPiREVNFLRFCKQHAEGVWAVVDVSIDGIRETPTASSYTNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDETAVH 506
                 *********************************************************99**************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHTXXXXX CS
       START 179 wllrslvksglaegaktwvatlqrqce 205
                 +l+r+l++sg+ +ga++wvatl+rqc+
  RWR80772.1 507 QLYRPLLSSGMGFGAQRWVATLKRQCQ 533
                 **************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 801 aa     Download sequence    
MSFGDFFDHS ASARVVADIP YNNMTAGAIS QPHMVSSTLT KTMFNTPGLS LALQTHMDGR  60
GEMGRVGNDF EASAGRNKED EYESRSGSDN MEGGSGDDQD ADNPPKKKRY HRHTPQQIQE  120
LESLFKECPH PDEKQRLELS RRLSLESRQV KFWFQNRRTQ MKTQLERHEN SLLRQENDKL  180
RAENLSIRDA MRNPICSNCG GPAMLGEVSL EEQHLRIENA RLKDELDRVC ALAGKFLGRP  240
VQSMAASVQP QMQFSSLDLA VGSNGFGGLS AVTTTLPLVT DFGGLSSTLP VVPGSAPANA  300
MGMERSIFLE LALASMDELL KMVQTDEPLW VPSLDSGKET LNYEEYMCTF PRCIGPKPVG  360
FVTEASRDRG IIIVSSGPLV ETLMDANRWA EMFPCLIARA STTDVISSGM GGTRNGTIQL  420
MRAELQVLSP LVPIREVNFL RFCKQHAEGV WAVVDVSIDG IRETPTASSY TNCRRLPSGC  480
VVQDMPNGYS KVTWVEHAEY DETAVHQLYR PLLSSGMGFG AQRWVATLKR QCQSLTMLMS  540
ATIPPARDPN PITASGRRSM LKLAARMTRN FFAGVCASTV HEWKKLSGVG KVVEEDDVTR  600
VMTRKSVDDP GEPPGIVLSA ATCVWLPVSP QRLFDFLRDE TLRREWDILS NGGPMQEMAH  660
LPKGPEPGIG NAVSLLRASS AMSGNQNSML ILQETSIDES GALVVYAPVD IPAMNVVMNG  720
GDSDYVALLP SGFAIVPDSP VGLGPLNNGA QKIGGSLLTV AFQILVNHLP TAKLTDESVD  780
TVNNLISCTV QKIKGALHCE S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein