PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR80887.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

Trihelix

Protein Properties

Length: 429aa MW: 49145.3 Da PI: 6.629

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR80887.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	78.9	7.2e-25	103	197	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 +Wt+ +v++Li ++++++e+ + ++ +kk++W++vsk+m++rg+ +sp+qC++k+++lnkryk++++ +++ +++++++ +++d+++ RWR80887.1 103 KWTDGMVRHLISIVSYIGEDAGPDSgrkklallQKKGKWKAVSKVMAARGCYVSPQQCEDKFNDLNKRYKRLTDVLGRGtSCKVVENPALLDSMT 197 7**************9999987666779999******************************************669*******9997 PP

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence
MSGGNLISGT YGVLDIQGSL HPHQQQHHPQ LLHQQHLQDA FPLSVGPRVG RDNEPQLGIV 60 GGGHRNCIHG DRAMNCTSDE DEPSFNEDEG GKGRKNSPWQ RMKWTDGMVR HLISIVSYIG 120 EDAGPDSGRK KLALLQKKGK WKAVSKVMAA RGCYVSPQQC EDKFNDLNKR YKRLTDVLGR 180 GTSCKVVENP ALLDSMTHLS EKMKEDVRKI LSSKHLFYEE MCSYHNGNRL HLLDDPSIQQ 240 CLQLVLSGKD GREQGKLVRD DDGEHDQDED DSDYEDDYGD VNINLHSEDG TIGAAHFPKK 300 MRLHHNMEHT DMGVPPSSHE CSKQSFAENH MMEMNETMQR QLIRSRLLQL EERSLSIQAQ 360 ALELESQRFK WQRFSRKKEK ELDKYRLENE KMKLENERML LELKRKELEL EYSRLDGSMA 420 SGSLAMDRL

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence

MSGGNLISGT YGVLDIQGSL HPHQQQHHPQ LLHQQHLQDA FPLSVGPRVG RDNEPQLGIV  60
GGGHRNCIHG DRAMNCTSDE DEPSFNEDEG GKGRKNSPWQ RMKWTDGMVR HLISIVSYIG  120
EDAGPDSGRK KLALLQKKGK WKAVSKVMAA RGCYVSPQQC EDKFNDLNKR YKRLTDVLGR  180
GTSCKVVENP ALLDSMTHLS EKMKEDVRKI LSSKHLFYEE MCSYHNGNRL HLLDDPSIQQ  240
CLQLVLSGKD GREQGKLVRD DDGEHDQDED DSDYEDDYGD VNINLHSEDG TIGAAHFPKK  300
MRLHHNMEHT DMGVPPSSHE CSKQSFAENH MMEMNETMQR QLIRSRLLQL EERSLSIQAQ  360
ALELESQRFK WQRFSRKKEK ELDKYRLENE KMKLENERML LELKRKELEL EYSRLDGSMA  420
SGSLAMDRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-81	Trihelix family protein