PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR80888.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

Trihelix

Protein Properties

Length: 727aa MW: 80031.8 Da PI: 5.203

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR80888.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	94.4	1.1e-29	96	180	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r+em+++++++ lk+plWe+vs++++e g++rs k+Ckek+en++k+yk++keg+ +r+ + + +++f+qlea RWR80888.1 96 RWPRQETLALLKIRSEMDTAFKEATLKGPLWEDVSRRLAELGYSRSGKKCKEKFENVQKYYKRTKEGRAGRQ--DGKCYRFFSQLEA 180 8*******************************************************************85..5556****985 PP
2	trihelix	104.4	8.3e-33	464	549	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k evlaLi++r+++e +++++ k+plWee+sk m++ g++rs+k+Ckekwen+nk++kk+ke++k+r +e+ +tcpyf+ql+a RWR80888.1 464 RWPKAEVLALINLRSSLELKYQESGPKGPLWEEISKGMQQLGYKRSSKRCKEKWENINKYFKKVKESKKQR-PEDAKTCPYFHQLDA 549 8******************************************************************98.99999******85 PP

Sequence ? help Back to Top
Protein Sequence Length: 727 aa Download sequence
MDTRMQQGGS QYGVSPEMET YAGGTGSRAH MLDQLLLQQQ KSGDAAAALA EAASPISSRP 60 PAGANFDELP PGGSGFPDEE ALAGEDVERG GTSGNRWPRQ ETLALLKIRS EMDTAFKEAT 120 LKGPLWEDVS RRLAELGYSR SGKKCKEKFE NVQKYYKRTK EGRAGRQDGK CYRFFSQLEA 180 LHSGSGGANP TVATTVPATS AIPTSVAMAS NNPIVGSSSG TIQSPPISAH VAVTRQRPDL 240 APTTAPAGVS GTAGAGVSFS SNTSSSTGSE EDEMEEGFNM EARKRKRTEL GGGGSSKKMT 300 AFFERLMKEV VEKQEKMLQR FIETMDKREQ DRMIREEAWR QQEMGRLTLE QERMAQERAI 360 SASRDAALIA FLQKFTGQTI QIVTIPAVAP PPQQTPRPTQ PNPTPLQPPP QPQQQQQQQQ 420 HQQHQNQSQI TEVAQHQPQS SELVLVQQEQ PEMTSGSYDP TSSRWPKAEV LALINLRSSL 480 ELKYQESGPK GPLWEEISKG MQQLGYKRSS KRCKEKWENI NKYFKKVKES KKQRPEDAKT 540 CPYFHQLDAL YRRKLFSSGG TGAQNKQEQQ MSLDSSSNEQ ESGDILAILP PPLPQTTAEI 600 KNNSSNTNQI GGSTEVGATL PIPTSNGGLP PSFFAEGTVK KPEDILKELM AGSNHHHQQQ 660 AAMKDDYDKI VDSDDLDEDD DDDEDEEDDE ESDEVKKIAY KIQYQKPSAG PSNGQENQSN 720 SFLGMVQ

Sequence ? help Back to Top

Protein Sequence Length: 727 aa Download sequence

MDTRMQQGGS QYGVSPEMET YAGGTGSRAH MLDQLLLQQQ KSGDAAAALA EAASPISSRP  60
PAGANFDELP PGGSGFPDEE ALAGEDVERG GTSGNRWPRQ ETLALLKIRS EMDTAFKEAT  120
LKGPLWEDVS RRLAELGYSR SGKKCKEKFE NVQKYYKRTK EGRAGRQDGK CYRFFSQLEA  180
LHSGSGGANP TVATTVPATS AIPTSVAMAS NNPIVGSSSG TIQSPPISAH VAVTRQRPDL  240
APTTAPAGVS GTAGAGVSFS SNTSSSTGSE EDEMEEGFNM EARKRKRTEL GGGGSSKKMT  300
AFFERLMKEV VEKQEKMLQR FIETMDKREQ DRMIREEAWR QQEMGRLTLE QERMAQERAI  360
SASRDAALIA FLQKFTGQTI QIVTIPAVAP PPQQTPRPTQ PNPTPLQPPP QPQQQQQQQQ  420
HQQHQNQSQI TEVAQHQPQS SELVLVQQEQ PEMTSGSYDP TSSRWPKAEV LALINLRSSL  480
ELKYQESGPK GPLWEEISKG MQQLGYKRSS KRCKEKWENI NKYFKKVKES KKQRPEDAKT  540
CPYFHQLDAL YRRKLFSSGG TGAQNKQEQQ MSLDSSSNEQ ESGDILAILP PPLPQTTAEI  600
KNNSSNTNQI GGSTEVGATL PIPTSNGGLP PSFFAEGTVK KPEDILKELM AGSNHHHQQQ  660
AAMKDDYDKI VDSDDLDEDD DDDEDEEDDE ESDEVKKIAY KIQYQKPSAG PSNGQENQSN  720
SFLGMVQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28300.1	2e-46	Trihelix family protein