PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR80998.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

ARR-B

Protein Properties

Length: 580aa MW: 64359.6 Da PI: 6.3546

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR80998.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	88.8	5e-28	345	399	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k++++Wt++LH+rFv+aveqL G+++A+P++ilelmkv+gLt+++v+SHLQkYR++ RWR80998.1 345 KTKVDWTSDLHRRFVQAVEQL-GIDHAIPSKILELMKVEGLTRHNVASHLQKYRMH 399 6799***************.******************************96 PP
2	Myb_DNA-binding	41.1	4e-13	348	397	2	48
SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 WT +++ ++v+av+qlG + +++I + m +g+t+ ++ s++qky+ RWR80998.1 348 VDWTSDLHRRFVQAVEQLGIDhaIPSKILELMKvEGLTRHNVASHLQKYR 397 57***********************************************7 PP
3	Response_reg	30.9	1.4e-11	20	126	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl+ d++ l l++ le+ +y +v ++ + eal + +k +++ ++ ++ ++dG ++ ++++ +lp iv++ +++ +++ +Ga RWR80998.1 20 VLLLDEDSLSSADLKSKLEEMDY-IVSTFCNENEALSAISDKAesFHVAIIEVSRGNSDGR--FRFLEAA-RDLPTIVISNIHCLSTMMKCIALGAA 112 7999999999***********.***********666666***********5..4444444.48***9999********* PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 +fl Kp ++e+l++ RWR80998.1 113 EFLQKPLSEEKLRN 126 *********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 580 aa Download sequence
MVCSADDLLG RSDFPKGLRV LLLDEDSLSS ADLKSKLEEM DYIVSTFCNE NEALSAISDK 60 AESFHVAIIE VSRGNSDGRF RFLEAARDLP TIVISNIHCL STMMKCIALG AAEFLQKPLS 120 EEKLRNIWQH VIHKMMKISE LNSPEQAFNA GGSGLSKSLK PIKETVASML QLQSETAEVK 180 NENPSDTENS AHADGHDVEQ SLAGDKYPAP STPQLERGRS LDVGDSQDKT SCAVKKESDE 240 HDRESTELRK VSCSESKSVE NTCINSVSAV AVKADSLSSP GVPPLEEEVD SADGSKTSEC 300 NASKESIISS HSHHGDNLES SAGDGYQKKA SAHPNSCVTK TNKKKTKVDW TSDLHRRFVQ 360 AVEQLGIDHA IPSKILELMK VEGLTRHNVA SHLQKYRMHR RHIMPKDDER KWQLQRDPMQ 420 RGYMHKPLMA FPPYHSNCGL PAGQIYPVWG HPSCPTPGMQ MWGHTGYPAW QPQENWLWNT 480 YPGMHADVWG CPVMSPHGPH VIPQPQMQDY SFVEPNMEVS RKSFDLQPAQ EVIDKLVKEV 540 ISQPWLPLPL GLKPPSTDSV LSELHNQGIG AFPPRPHHSI

Sequence ? help Back to Top

Protein Sequence Length: 580 aa Download sequence

MVCSADDLLG RSDFPKGLRV LLLDEDSLSS ADLKSKLEEM DYIVSTFCNE NEALSAISDK  60
AESFHVAIIE VSRGNSDGRF RFLEAARDLP TIVISNIHCL STMMKCIALG AAEFLQKPLS  120
EEKLRNIWQH VIHKMMKISE LNSPEQAFNA GGSGLSKSLK PIKETVASML QLQSETAEVK  180
NENPSDTENS AHADGHDVEQ SLAGDKYPAP STPQLERGRS LDVGDSQDKT SCAVKKESDE  240
HDRESTELRK VSCSESKSVE NTCINSVSAV AVKADSLSSP GVPPLEEEVD SADGSKTSEC  300
NASKESIISS HSHHGDNLES SAGDGYQKKA SAHPNSCVTK TNKKKTKVDW TSDLHRRFVQ  360
AVEQLGIDHA IPSKILELMK VEGLTRHNVA SHLQKYRMHR RHIMPKDDER KWQLQRDPMQ  420
RGYMHKPLMA FPPYHSNCGL PAGQIYPVWG HPSCPTPGMQ MWGHTGYPAW QPQENWLWNT  480
YPGMHADVWG CPVMSPHGPH VIPQPQMQDY SFVEPNMEVS RKSFDLQPAQ EVIDKLVKEV  540
ISQPWLPLPL GLKPPSTDSV LSELHNQGIG AFPPRPHHSI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18020.3	1e-110	ARR-B family protein