PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR81008.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

GATA

Protein Properties

Length: 562aa MW: 62634.9 Da PI: 6.6403

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR81008.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	38.1	2.2e-12	3	32	6	35
GATA 6 ttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 +t TplWR+gp ++ LCnaCG ++r kg+ RWR81008.1 3 STATPLWRNGPPEKPVLCNACGSRWRTKGT 32 588******88888*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 562 aa Download sequence
MYSTATPLWR NGPPEKPVLC NACGSRWRTK GTLTNYTPLH ARVEPTDSEN YRKVGVVKPI 60 IIKTKEKKLQ KRKLLNDNAE LSGEALIFDQ NFRRVYEEDT TNRSSSGSAT SYSESCVHVG 120 STDASDLTGT AQSIVWDSLV PSRKRTCVGR PKSSSVEKLT KDLYSILHQQ QSSCLTGSLE 180 EDLLFETGTL MDSVEIGHGG VLIKHLNVVA RDEESVASSL PIDSKEYITN DTYSRSAFLP 240 APIANKGIST PKIGNEKVKR FAATGPQQAA QEHTKRCLAF FCQYIIMLLL TENDVVCFEK 300 FVRNFSPEEQ QHLMKLLPSI DTAKLPDSLK SMFDSPQFVE AVSSFQHLLL EGIFDLSFSE 360 VKIEECRTVK RLALVNMTKS KWVEHYELLK DVKGRTIAGK GVETEINSPS CSNSASIKRT 420 HDGQNQNFPE TKCLVKGPKR VHYCTTVNVP FIRPPQPNSN YVGTEVSLDV KYVDNEGSCC 480 SPISLFAFPP DGSSVTLDSL QFTDDNQDLL FDVPSYASFP EAELLDYHPL KQKNPPKGSL 540 IENRNIEKEE TLSTYPSLSF IG

Sequence ? help Back to Top

Protein Sequence Length: 562 aa Download sequence

MYSTATPLWR NGPPEKPVLC NACGSRWRTK GTLTNYTPLH ARVEPTDSEN YRKVGVVKPI  60
IIKTKEKKLQ KRKLLNDNAE LSGEALIFDQ NFRRVYEEDT TNRSSSGSAT SYSESCVHVG  120
STDASDLTGT AQSIVWDSLV PSRKRTCVGR PKSSSVEKLT KDLYSILHQQ QSSCLTGSLE  180
EDLLFETGTL MDSVEIGHGG VLIKHLNVVA RDEESVASSL PIDSKEYITN DTYSRSAFLP  240
APIANKGIST PKIGNEKVKR FAATGPQQAA QEHTKRCLAF FCQYIIMLLL TENDVVCFEK  300
FVRNFSPEEQ QHLMKLLPSI DTAKLPDSLK SMFDSPQFVE AVSSFQHLLL EGIFDLSFSE  360
VKIEECRTVK RLALVNMTKS KWVEHYELLK DVKGRTIAGK GVETEINSPS CSNSASIKRT  420
HDGQNQNFPE TKCLVKGPKR VHYCTTVNVP FIRPPQPNSN YVGTEVSLDV KYVDNEGSCC  480
SPISLFAFPP DGSSVTLDSL QFTDDNQDLL FDVPSYASFP EAELLDYHPL KQKNPPKGSL  540
IENRNIEKEE TLSTYPSLSF IG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	67	74	KKLQKRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	1e-102	GATA family protein