PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR81031.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB

Protein Properties

Length: 347aa MW: 38401.2 Da PI: 6.6258

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR81031.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61.1	2.3e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+lvd+++++G g+W +++ g++R++k+c++rw +yl RWR81031.1 14 KGPWTPEEDEKLVDYIQKHGLGSWGVLPKHAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	49.8	7.9e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +v+++ lG++ W++Ia +++ gRt++++k++w++++ RWR81031.1 67 RGKFSHDEEKMIVHLHSVLGNK-WSAIATRLP-GRTDNEIKNFWNTHM 112 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence
MGRSPSSDEK GLKKGPWTPE EDEKLVDYIQ KHGLGSWGVL PKHAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF SHDEEKMIVH LHSVLGNKWS AIATRLPGRT DNEIKNFWNT HMKKKLLKMG 120 IDPVTHKPRT DLNLLEDLTH FLGGSNYGSV MSTWESAHFA RVKLLQSLIQ AIARSSPLMG 180 SPSLGNFHLN DLLQSNHQVD GNDSLGLVHD PIPVPSNFSN LGEIQLPSNY QDLGRPCTSL 240 DGQEMVTPIN GSALRMPGLS CDLANNCIVD NNHMANSFIL TPPNSAPMVS VASSTDQMLD 300 QINPSDISSH SSTSTGFEAW GVFNLDDQAS DYQWTDFIDQ TEASIKS

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence

MGRSPSSDEK GLKKGPWTPE EDEKLVDYIQ KHGLGSWGVL PKHAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SHDEEKMIVH LHSVLGNKWS AIATRLPGRT DNEIKNFWNT HMKKKLLKMG  120
IDPVTHKPRT DLNLLEDLTH FLGGSNYGSV MSTWESAHFA RVKLLQSLIQ AIARSSPLMG  180
SPSLGNFHLN DLLQSNHQVD GNDSLGLVHD PIPVPSNFSN LGEIQLPSNY QDLGRPCTSL  240
DGQEMVTPIN GSALRMPGLS CDLANNCIVD NNHMANSFIL TPPNSAPMVS VASSTDQMLD  300
QINPSDISSH SSTSTGFEAW GVFNLDDQAS DYQWTDFIDQ TEASIKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	1e-82	MYB family protein