PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR81468.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

LBD

Protein Properties

Length: 198aa MW: 21527.5 Da PI: 8.3713

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR81468.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	147.9	2.7e-46	8	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv+kll++l++++reda++sl+yeA++r+rdPvyG+vgvi+ lq+ql+ql+ +l+ +k+ RWR81468.1 8 PCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELQPHQREDAVNSLAYEADMRLRDPVYGCVGVISFLQHQLRQLQMDLSCAKS 106 7**********************************************************************************************9998 PP DUF260 100 e 100 e RWR81468.1 107 E 107 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence
MASSSNSPCA ACKFLRRKCQ PECVFAPYFP PDQPQKFANV HKVFGASNVT KLLNELQPHQ 60 REDAVNSLAY EADMRLRDPV YGCVGVISFL QHQLRQLQMD LSCAKSELSK YQNVGIAGHG 120 IIAAGNAPIG IGLGREQFFP RDPQMMVRNY DADMARLGAS GAYDASLLAM NVSASIGPLG 180 QFQHPRAGGD ERRSVGPS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65620.3	2e-73	LBD family protein