PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR81537.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB

Protein Properties

Length: 383aa MW: 41800.9 Da PI: 5.0531

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR81537.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.2	1.7e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++++G g+W++ + + g+ R++k+c++rw +yl RWR81537.1 14 KGPWTPEEDQKLLAYIEEHGHGSWRALPGKAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	52.9	8.5e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l RWR81537.1 67 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence
MGRSPCCDKV GLKKGPWTPE EDQKLLAYIE EHGHGSWRAL PGKAGLQRCG KSCRLRWTNY 60 LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLAKMG 120 IDPVTHKPRC DALGSVDGQN KSAANLSHMA QWESARLEAE ARLVRESKLR SEASFHSQSQ 180 AQQQLGTSSA SLLSHLKQTT PPPPPPPLPT SQGSVWSKSS NGGPLDLESP TSTLSFSENA 240 VHSVVGFGDN STTKIDSSEG GGGGGDWRGY GNGNPTLSTS SSDEKEEVAA FPTADADDMV 300 IFPTTQGPWS PSTTTAKPPP ASSSCFVEGF TDLLLQNSDD DDKNNNDNSE EEEDEDEDED 360 DANNYWNNIL NLVNSSPSNS PLF

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence

MGRSPCCDKV GLKKGPWTPE EDQKLLAYIE EHGHGSWRAL PGKAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLAKMG  120
IDPVTHKPRC DALGSVDGQN KSAANLSHMA QWESARLEAE ARLVRESKLR SEASFHSQSQ  180
AQQQLGTSSA SLLSHLKQTT PPPPPPPLPT SQGSVWSKSS NGGPLDLESP TSTLSFSENA  240
VHSVVGFGDN STTKIDSSEG GGGGGDWRGY GNGNPTLSTS SSDEKEEVAA FPTADADDMV  300
IFPTTQGPWS PSTTTAKPPP ASSSCFVEGF TDLLLQNSDD DDKNNNDNSE EEEDEDEDED  360
DANNYWNNIL NLVNSSPSNS PLF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01140.1	1e-109	MYB family protein