PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR81769.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family MIKC_MADS
Protein Properties Length: 236aa    MW: 27013.4 Da    PI: 8.6919
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR81769.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.76.4e-28959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krien +nrqvt+skRr gilKKA EL vLCdaev++i+fsstgk+ ey+s
  RWR81769.1  9 KRIENPTNRQVTYSKRRGGILKKARELTVLCDAEVSLIMFSSTGKFSEYCS 59
                79***********************************************96 PP
2K-box99.54.9e-3371168198
       K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                 yq+ sg +l+++++e++q++l+kLk+ ++nL+re+R+++GedL++L++ eL+ Leq+L++slk +R++K++++++q+e+ +kk k+l+e++++L + l
  RWR81769.1  71 YQQVSGINLWNSHYEKMQNHLNKLKDDNNNLRREIRQRMGEDLNDLEIDELRGLEQNLDNSLKIVRDRKYHVITTQTETYKKKLKSLHETHTDLVRAL 168
                 7899999***************************************************************************************9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    
MGRGKIEIKR IENPTNRQVT YSKRRGGILK KARELTVLCD AEVSLIMFSS TGKFSEYCSP  60
TTTTKKVFDR YQQVSGINLW NSHYEKMQNH LNKLKDDNNN LRREIRQRMG EDLNDLEIDE  120
LRGLEQNLDN SLKIVRDRKY HVITTQTETY KKKLKSLHET HTDLVRALDG KDDNGNCALV  180
DNGGPDYETA LGWANGGSQM FAFCIQPCQP NLQETRYGSH DLRLGSSSTV TQLQPL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.13e-68MIKC_MADS family protein