PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR81919.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

LBD

Protein Properties

Length: 170aa MW: 18572.2 Da PI: 8.6148

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR81919.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	146.2	9e-46	13	112	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca++Cv+apyfpa++p+kfanvhk+FGasnv k+l++lp ++r+da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++lal+++ RWR81919.1 13 PCAACKLLRRRCAQGCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPMHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQVDVLQTQLALAQA 111 7**********************************************************************************************9997 PP DUF260 100 e 100 e RWR81919.1 112 E 112 6 PP

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence
MRDMSRKQGA SSPCAACKLL RRRCAQGCVF APYFPADEPQ KFANVHKVFG ASNVNKMLQE 60 LPMHQRSDAV SSMVYEANAR VRDPVYGCVG AISSLQQQVD VLQTQLALAQ AEVVHMRMRQ 120 ATSFSGLAGN SVESGSPSSK LTTPHSHSRS LFAMDMVVDQ TNMGESLWSC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	4e-71	LBD family protein