PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR81948.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MIKC_MADS

Protein Properties

Length: 219aa MW: 25443 Da PI: 9.4196

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR81948.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	87.5	7.2e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien +nrqvtfskRr g+lKKA+EL vLCda+ viifss+gk++eyss RWR81948.1 9 KRIENATNRQVTFSKRRGGLLKKAHELAVLCDAQLGVIIFSSSGKMFEYSS 59 79***********************************************96 PP
2	K-box	74.6	2.8e-25	71	160	1	90
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 yqk sg++ +e + ++ + e++++k+e+++Lq + Rhl GedL +L++ +L+qLeqqLe s++++Rs+Kn ll +q+e+l++k e+q + RWR81948.1 71 YQKVSGTHIQEYDDQQVYCEMTRMKNENDKLQASMRHLTGEDLATLTMGDLHQLEQQLEMSVNRVRSRKNLLLQQQLENLRRKLAEHQAA 160 799999999999***********************************************************************9998876 PP

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence
MGRGKIEIKR IENATNRQVT FSKRRGGLLK KAHELAVLCD AQLGVIIFSS SGKMFEYSSP 60 QSSMRHIIDR YQKVSGTHIQ EYDDQQVYCE MTRMKNENDK LQASMRHLTG EDLATLTMGD 120 LHQLEQQLEM SVNRVRSRKN LLLQQQLENL RRKLAEHQAA MEQKVVDQPL LEHFGGAFYQ 180 DEQARNMLQL SPQLHPFRLQ PTQPNLQDAS IQRHGFQLW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G20240.1	3e-47	MIKC_MADS family protein