PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR81990.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

HD-ZIP

Protein Properties

Length: 210aa MW: 23761.1 Da PI: 8.2854

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR81990.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.8	4.5e-19	58	112	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq + Lee F++n++++ +++e LA +l+L+ rqV vWFqNrRa+ k RWR81990.1 58 RKKLRLTKEQSRLLEESFRENQTLTPKQKETLALELKLKPRQVEVWFQNRRARTK 112 78889************************************************98 PP
2	HD-ZIP_I/II	119.5	1.7e-38	58	146	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl+keq++lLEesF+e+++L+p++K++la eL+l+prqv+vWFqnrRARtk+kq+E+++e+Lkr++ +l+een+rL++eveeLr+ RWR81990.1 58 RKKLRLTKEQSRLLEESFRENQTLTPKQKETLALELKLKPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLREENRRLQREVEELRA 146 69*************************************************************************************94 PP

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence
MEIIPSSSSS LDLTMAPPAS DGVCCMRDLD INQVPSSGME SWANRGIEEE DDNGGPPRKK 60 LRLTKEQSRL LEESFRENQT LTPKQKETLA LELKLKPRQV EVWFQNRRAR TKLKQTEMEC 120 EYLKRCFGSL REENRRLQRE VEELRAMRVA PPTVLSPHTC EPLPASTLSM CPRCERVTTT 180 TTTTITNKKG KVGPTYHSSE SHLSAAAAAW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	107	115	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01430.1	2e-67	HD-ZIP family protein