PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR82002.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family bHLH
Protein Properties Length: 177aa    MW: 19900.1 Da    PI: 9.242
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR82002.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.29.7e-111461655
                HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                +  E++RR +++s  ++L +l P+ +   p+  ls  + Le+A+eYI++Lq
  RWR82002.1 14 KTLEKNRRMNMKSLCFKLSSLTPSdS---PKMALSMPDKLEQATEYIRNLQ 61
                679*********************44...9999*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    
MKSSQSSSSK LERKTLEKNR RMNMKSLCFK LSSLTPSDSP KMALSMPDKL EQATEYIRNL  60
QENIEALKKK RDLASHIVET SKDVTDGMMI GFRLPVIEVR ESGSAVEVLL ITGLKKNFML  120
CNVISIIEEE GAQVVNASFS CTADMVFHII HSQVTSSRVG FGSARVHERL KELVYWT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.12e-33bHLH family protein