PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR82023.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB

Protein Properties

Length: 1131aa MW: 127528 Da PI: 7.215

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR82023.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.4	7.9e-09	422	466	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++WT Ed+ l+ v+q G +W Ia mgkgRt+ qc sr+q RWR82023.1 422 NSWTNLEDKNLLFIVQQRGIYNWIEIATSMGKGRTPFQCLSRYQR 466 58*****************************************96 PP
2	Myb_DNA-binding	41.8	2.6e-13	475	520	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEd +l +v+ lG ++W +a +g gRt+ qc +rw+k l RWR82023.1 475 RDWTVEEDAQLCAVVETLGEHDWQGVATALG-GRTGSQCSNRWRKTL 520 57***************************.**********975 PP
3	Myb_DNA-binding	39.1	1.7e-12	528	573	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 grW +Ed++l+ v ++G++ W++Ia+ ++ gRt qc++rw++ l RWR82023.1 528 GRWAVDEDKRLKISVMLFGPKLWNKIAKFIP-GRTQVQCRERWFNTL 573 89***************************.**********975 PP
4	Myb_DNA-binding	48.9	1.6e-15	580	621	2	45
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 g+W++eEd +l+ ++++G W++Ia++++ gRt+ qc+ rw RWR82023.1 580 GPWSEEEDAKLKAKITEHGYC-WSKIAACVP-GRTDSQCRRRWK 621 79***************99.*****.*********5 PP

Sequence ? help Back to Top
Protein Sequence Length: 1131 aa Download sequence
MAPSSFSDDS EDDRDESFNE DMEALKRACV LTGKNPNEIE PPASMAAAPE SDDSDAESEE 60 IDDMKLVRSI QKRFSFPSDV LQISKSIRSH APGDSDEEDD FETLRAIQRR FSHYDKDGLM 120 KSDGNLCNNE LACTTSLTSE RDTSNILSEG FPDLGDTLVN SNMSKVCSIT PESQPSDSTE 180 CYQQEDRTSN LSALPLNHAN FPKFAQMFIA AIKKNRSCQK FIRSKIIQIE ARIEENKELK 240 ERVKCIMDFQ VSCKRKAAKL LSQLKDPRAK LISLPKARIL NSEKVKDKKV HASCLGPTEN 300 NHVPNYKMVL TKFPVSLSRQ RWSKVEKENL AKGIKQQFQE VLLQKSMEQY SDLELEGSSG 360 EFNDLDNIIA SITNLEITPE NIRCFLPQVD WERLASMYVM GRSGAECETR WLNHEDPLIN 420 HNSWTNLEDK NLLFIVQQRG IYNWIEIATS MGKGRTPFQC LSRYQRSLNA YILKRDWTVE 480 EDAQLCAVVE TLGEHDWQGV ATALGGRTGS QCSNRWRKTL HPSRQRVGRW AVDEDKRLKI 540 SVMLFGPKLW NKIAKFIPGR TQVQCRERWF NTLDPSLNLG PWSEEEDAKL KAKITEHGYC 600 WSKIAACVPG RTDSQCRRRW KILFPHEVPL LQAARKIQKS ALISNFVDRE EQRPALGPCD 660 FVSASLEINS LSEYGNKNSK AKRRKKSCDD PQPSNLRKSS NAKTPVVEST REKDGGDDVT 720 SHGANSIFIP KKRTKKKLRK AQPKGTVCDD ASLDGNSSPK DISQVSKLKK SRTKHKVSTQ 780 KEVSELGCNS TPKKRTKKKP PKAHANEIQC VESVESYRDL LHPQNVVLST VENDASLDGN 840 LRPKNMTQES KFKKSMIKRK KCRQDVAEVE YDDDTTLASV FCDIVKRRRL KHATNDIVSD 900 QAADLFPMRT ENRASNLPFT RDIRNRPADD QPCQEDSIVR AIDSVGGSVT SVQHGSPNID 960 DSSQHDTMRN STTNENFSCQ EPLIMMDAID SFVADQAIEM CPEGNTISRK QHKSYKLAWR 1020 DKRVHPIEDC EALPLVGQSI LETMDTSTAI LDGSDASLLK KTVLFGEHKL ESPKRPEIVS 1080 EFSETCCIVG DGEEVPHAAQ ETAILWDSEA QLCDGLTPQL PSTGNMNPNL P

Sequence ? help Back to Top

Protein Sequence Length: 1131 aa Download sequence

MAPSSFSDDS EDDRDESFNE DMEALKRACV LTGKNPNEIE PPASMAAAPE SDDSDAESEE  60
IDDMKLVRSI QKRFSFPSDV LQISKSIRSH APGDSDEEDD FETLRAIQRR FSHYDKDGLM  120
KSDGNLCNNE LACTTSLTSE RDTSNILSEG FPDLGDTLVN SNMSKVCSIT PESQPSDSTE  180
CYQQEDRTSN LSALPLNHAN FPKFAQMFIA AIKKNRSCQK FIRSKIIQIE ARIEENKELK  240
ERVKCIMDFQ VSCKRKAAKL LSQLKDPRAK LISLPKARIL NSEKVKDKKV HASCLGPTEN  300
NHVPNYKMVL TKFPVSLSRQ RWSKVEKENL AKGIKQQFQE VLLQKSMEQY SDLELEGSSG  360
EFNDLDNIIA SITNLEITPE NIRCFLPQVD WERLASMYVM GRSGAECETR WLNHEDPLIN  420
HNSWTNLEDK NLLFIVQQRG IYNWIEIATS MGKGRTPFQC LSRYQRSLNA YILKRDWTVE  480
EDAQLCAVVE TLGEHDWQGV ATALGGRTGS QCSNRWRKTL HPSRQRVGRW AVDEDKRLKI  540
SVMLFGPKLW NKIAKFIPGR TQVQCRERWF NTLDPSLNLG PWSEEEDAKL KAKITEHGYC  600
WSKIAACVPG RTDSQCRRRW KILFPHEVPL LQAARKIQKS ALISNFVDRE EQRPALGPCD  660
FVSASLEINS LSEYGNKNSK AKRRKKSCDD PQPSNLRKSS NAKTPVVEST REKDGGDDVT  720
SHGANSIFIP KKRTKKKLRK AQPKGTVCDD ASLDGNSSPK DISQVSKLKK SRTKHKVSTQ  780
KEVSELGCNS TPKKRTKKKP PKAHANEIQC VESVESYRDL LHPQNVVLST VENDASLDGN  840
LRPKNMTQES KFKKSMIKRK KCRQDVAEVE YDDDTTLASV FCDIVKRRRL KHATNDIVSD  900
QAADLFPMRT ENRASNLPFT RDIRNRPADD QPCQEDSIVR AIDSVGGSVT SVQHGSPNID  960
DSSQHDTMRN STTNENFSCQ EPLIMMDAID SFVADQAIEM CPEGNTISRK QHKSYKLAWR  1020
DKRVHPIEDC EALPLVGQSI LETMDTSTAI LDGSDASLLK KTVLFGEHKL ESPKRPEIVS  1080
EFSETCCIVG DGEEVPHAAQ ETAILWDSEA QLCDGLTPQL PSTGNMNPNL P

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	732	740	KRTKKKLRK
2	733	739	RTKKKLR
3	886	890	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.1	0.0	MYB family protein