PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR82235.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family LBD
Protein Properties Length: 241aa    MW: 26317.8 Da    PI: 6.929
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR82235.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26090.32.4e-284106198
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+ lr++C+++C+++p++     p++q++++ +++k++G++ +l+l++a pe+ r+++++sl+ eA+ r+ +P+yG+vg++++++++l+q+++e 
  RWR82235.1   4 SCNGCRALRKGCSDNCTIRPCLqwihsPQSQANATIFLAKFYGRAGLLNLINAGPEHLRPAIFRSLLHEACGRIVNPIYGSVGLLSSGSWKLCQSAVED 102
                 6**********************************************************************************************9987 PP

      DUF260  95 allk 98 
                 +l +
  RWR82235.1 103 VLNG 106
                 7665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    
MRMSCNGCRA LRKGCSDNCT IRPCLQWIHS PQSQANATIF LAKFYGRAGL LNLINAGPEH  60
LRPAIFRSLL HEACGRIVNP IYGSVGLLSS GSWKLCQSAV EDVLNGAPII QLGSDPAPAP  120
SPSPQIKAGD IRHVSKQEPH RVKTRTRFKR VARKPKTILE LPAAELASEP VSNLKWTTSH  180
DSLLSHHDEL NAESDSAFSV ETVEDSLVDR AEPEPEPGSR ADENEQDQDL DLGLTLGFGR  240
I
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-72LBD family protein