PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR82329.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

FAR1

Protein Properties

Length: 862aa MW: 98322 Da PI: 7.7311

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR82329.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	93.2	3.2e-29	56	144	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YA+++GFs+rk+++++ +++g i++r+fvCs+eg+r+++k++ ++ +++r etrtgC+a + ++++ +g++ +t++ l+HnH+la RWR82329.1 56 DFYNKYARKAGFSIRKDTKNRDRKTGVIKSRRFVCSREGYRRPDKRD-VNVKHHRDETRTGCEAYMSITLQVNGTYIITDFGLDHNHPLA 144 6******************************************99.999***********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 862 aa Download sequence
MESRDLSPSG RPCERMEVAS DDLTKSSVLI DDKGKDDGAL DPVVGMEFQT EDDAYDFYNK 60 YARKAGFSIR KDTKNRDRKT GVIKSRRFVC SREGYRRPDK RDVNVKHHRD ETRTGCEAYM 120 SITLQVNGTY IITDFGLDHN HPLANPMEVH LLRSQRKFAL TPAAVADGCD SSRTVLKGAS 180 KSSSRQAGAE ENVGHLHIDC NNSLSSKRMK EMVKFDAGYL LEYFKQKQQE DLSFFSSIQL 240 DDEDRITNVF WADARMLMDY ECFGDVVCFD TTYKVHEYGR PFAPFIGVNH QKQAIIFGVA 300 FLYDETVESY KWLFKTFCDA MSGRKPKTIF TDQSRVMANA IEVEMPETVH RICAWHIFQN 360 ALKHLSHVFS ASQSFSDDFG KCVYDYEEED EFLQAWDNML RKYRLVDNMW LQQLFIEREK 420 WALVYGKDTF CADIINTQRG ETLNKEFKKY LHPTHNMLHF LENFQRLVDE RRYAELKANF 480 KMTQSLPKVI LPVDILTHAS SVYTPKIFEM FQTEYVSSLN HIVKGCSEVG SVKNYEVADG 540 KGRCYSVTSN LTDEAIACSC RMYEFLGVLC GHTLRVIGNT VRFIPTKYIL KRWTREATTF 600 SLKSSSAACV SEDDHKKIFS RRYRDLLSNF VKIAARAAEN EEAYKCVANL SNKMWQDIGE 660 ILREGAASKE PSKDDENLGD EARGQDKSTV DNVQSEEVNK NKGKEGTGSG GRKTKGCLGK 720 GSQKKRPKKV PPPTPSTIPS NTCPTPVQYP VPISPPSLFL QGSYGSELNP LTFNYQYHAQ 780 NQHQMDPCMY QPPLEMHHRS HSVMYRPLDL NHTQLRQGNL SHNFSRESIC STSYLSQESS 840 AFGMSQQIMS GSGSQRKSSK EG

Sequence ? help Back to Top

Protein Sequence Length: 862 aa Download sequence

MESRDLSPSG RPCERMEVAS DDLTKSSVLI DDKGKDDGAL DPVVGMEFQT EDDAYDFYNK  60
YARKAGFSIR KDTKNRDRKT GVIKSRRFVC SREGYRRPDK RDVNVKHHRD ETRTGCEAYM  120
SITLQVNGTY IITDFGLDHN HPLANPMEVH LLRSQRKFAL TPAAVADGCD SSRTVLKGAS  180
KSSSRQAGAE ENVGHLHIDC NNSLSSKRMK EMVKFDAGYL LEYFKQKQQE DLSFFSSIQL  240
DDEDRITNVF WADARMLMDY ECFGDVVCFD TTYKVHEYGR PFAPFIGVNH QKQAIIFGVA  300
FLYDETVESY KWLFKTFCDA MSGRKPKTIF TDQSRVMANA IEVEMPETVH RICAWHIFQN  360
ALKHLSHVFS ASQSFSDDFG KCVYDYEEED EFLQAWDNML RKYRLVDNMW LQQLFIEREK  420
WALVYGKDTF CADIINTQRG ETLNKEFKKY LHPTHNMLHF LENFQRLVDE RRYAELKANF  480
KMTQSLPKVI LPVDILTHAS SVYTPKIFEM FQTEYVSSLN HIVKGCSEVG SVKNYEVADG  540
KGRCYSVTSN LTDEAIACSC RMYEFLGVLC GHTLRVIGNT VRFIPTKYIL KRWTREATTF  600
SLKSSSAACV SEDDHKKIFS RRYRDLLSNF VKIAARAAEN EEAYKCVANL SNKMWQDIGE  660
ILREGAASKE PSKDDENLGD EARGQDKSTV DNVQSEEVNK NKGKEGTGSG GRKTKGCLGK  720
GSQKKRPKKV PPPTPSTIPS NTCPTPVQYP VPISPPSLFL QGSYGSELNP LTFNYQYHAQ  780
NQHQMDPCMY QPPLEMHHRS HSVMYRPLDL NHTQLRQGNL SHNFSRESIC STSYLSQESS  840
AFGMSQQIMS GSGSQRKSSK EG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-127	FAR1 family protein