PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR82407.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

bHLH

Protein Properties

Length: 416aa MW: 46415.8 Da PI: 5.0031

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR82407.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.4	1.4e-09	225	272	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq RWR82407.1 225 SHSLAERVRREKISERMKFLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 272 8************************....999***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence
MSRALPEMLQ CADLTVLERK GERMKWQQQQ QQYQQSYLQE SQMSFIPSFQ TEMLELSMMQ 60 EMSKNGAENG WPDLGKYQIN DTESAAYLTA GFGAGEDYGI SRTASCPPVV GEEKGGDFPV 120 LEKMVVKESS KKRRADKAAT CLKANDVVEG TRDKRLKGDT NEEESKAAEQ NPTTTTTTNN 180 NNNNSSSINN RETSADSSKE NSKVSDVQKP DYIHVRARRG QATDSHSLAE RVRREKISER 240 MKFLQDLVPG CNKITGKAGM LDEIINYVQS LQRQVEFLSM KLAAVNPRID FNIDNFFLKE 300 MLSGCNGSYS TLGVSQELTN PVLLQFNPMH QGVTCSGMDM AINPSDITLR RTTSAPLSLP 360 DTFVDSYFHA NGSSSNNWDI DLSTLYSGDF QQGRQSVFPS QSLTGNLEVN NLKMEM

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence

MSRALPEMLQ CADLTVLERK GERMKWQQQQ QQYQQSYLQE SQMSFIPSFQ TEMLELSMMQ  60
EMSKNGAENG WPDLGKYQIN DTESAAYLTA GFGAGEDYGI SRTASCPPVV GEEKGGDFPV  120
LEKMVVKESS KKRRADKAAT CLKANDVVEG TRDKRLKGDT NEEESKAAEQ NPTTTTTTNN  180
NNNNSSSINN RETSADSSKE NSKVSDVQKP DYIHVRARRG QATDSHSLAE RVRREKISER  240
MKFLQDLVPG CNKITGKAGM LDEIINYVQS LQRQVEFLSM KLAAVNPRID FNIDNFFLKE  300
MLSGCNGSYS TLGVSQELTN PVLLQFNPMH QGVTCSGMDM AINPSDITLR RTTSAPLSLP  360
DTFVDSYFHA NGSSSNNWDI DLSTLYSGDF QQGRQSVFPS QSLTGNLEVN NLKMEM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34530.1	2e-58	bHLH family protein