PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR82516.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

Trihelix

Protein Properties

Length: 548aa MW: 62366.3 Da PI: 7.4186

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR82516.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	90.9	1.3e-28	94	179	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r+++++++++++ k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+ql+a RWR82516.1 94 RWPRQETLTLLEVRSRLDHKFKEANHKGPLWDEVSRIMaEEHGYRRSGKKCREKLENLYKYYKKTKEGKAGR--QDGKHYRFFRQLDA 179 8***********************************999*************************98..55667*****85 PP
2	trihelix	69.7	5.5e-22	398	478	6	86
trihelix 6 evlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 e+l Li++r+ me ++++ g ++ +lW+e++ km g+ + +++Ck+kwe++n++ kk k+++kkr +e+s+t pyf++l+ RWR82516.1 398 EILYLIQLRSAMEMEFKEgGYSNSALWQEIAGKMGCLGYDIDANRCKDKWESINGYLKKNKDSNKKR-KENSKTRPYFQHLD 478 9**************944699***************************************8.78889*****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 548 aa Download sequence
MGEKYDLPEL RQMFAGRSNY TGVTHVGKTH LGGHQNLTSG QHYDQMGVVG KMMLPSSSAA 60 VAAAAQGQVQ RRVVEFRSDS SSVSGFEEGG GNGRWPRQET LTLLEVRSRL DHKFKEANHK 120 GPLWDEVSRI MAEEHGYRRS GKKCREKLEN LYKYYKKTKE GKAGRQDGKH YRFFRQLDAL 180 YGENSNPTIE TNLIDNNPCL QSTNPSTFQL NQETFQGQKL SESLSLSNSS ESNTSSSSSD 240 EDLNTIAITG KDTINKQKDA SNLKRGRKSW KAKIREFVDL QMKKFMDIQE AWLERMLKTI 300 EHHEQERIAR EEAWRKQESE RFNHEHRIWA SERAWIEARS TALIEALNKF NRDEIKTSLS 360 PEELTAAIDV HEDGQNEMEN GRETFGSSMN NRRCSELEIL YLIQLRSAME MEFKEGGYSN 420 SALWQEIAGK MGCLGYDIDA NRCKDKWESI NGYLKKNKDS NKKRKENSKT RPYFQHLDSL 480 YMEGGGICSH GTNEQVLETA AEGPNNGPSP SNSNTGAVRN DSCLRFLMAD GENLWENYGV 540 KLSKDGSQ

Sequence ? help Back to Top

Protein Sequence Length: 548 aa Download sequence

MGEKYDLPEL RQMFAGRSNY TGVTHVGKTH LGGHQNLTSG QHYDQMGVVG KMMLPSSSAA  60
VAAAAQGQVQ RRVVEFRSDS SSVSGFEEGG GNGRWPRQET LTLLEVRSRL DHKFKEANHK  120
GPLWDEVSRI MAEEHGYRRS GKKCREKLEN LYKYYKKTKE GKAGRQDGKH YRFFRQLDAL  180
YGENSNPTIE TNLIDNNPCL QSTNPSTFQL NQETFQGQKL SESLSLSNSS ESNTSSSSSD  240
EDLNTIAITG KDTINKQKDA SNLKRGRKSW KAKIREFVDL QMKKFMDIQE AWLERMLKTI  300
EHHEQERIAR EEAWRKQESE RFNHEHRIWA SERAWIEARS TALIEALNKF NRDEIKTSLS  360
PEELTAAIDV HEDGQNEMEN GRETFGSSMN NRRCSELEIL YLIQLRSAME MEFKEGGYSN  420
SALWQEIAGK MGCLGYDIDA NRCKDKWESI NGYLKKNKDS NKKRKENSKT RPYFQHLDSL  480
YMEGGGICSH GTNEQVLETA AEGPNNGPSP SNSNTGAVRN DSCLRFLMAD GENLWENYGV  540
KLSKDGSQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	1e-87	Trihelix family protein