PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR82612.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB

Protein Properties

Length: 353aa MW: 40184 Da PI: 6.9275

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR82612.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.5	1.1e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed +l+d+++++G+g +W + ++++g++R++k+c++rw++yl RWR82612.1 14 KGPWSPDEDAKLKDYIEKHGTGgNWIALPNKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	38.1	3.6e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ RWR82612.1 69 GGFSEEEDNIICSLYMSIGSR-WSIIAAQLP-GRTDNDVKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MGRAPCCDKA KVKKGPWSPD EDAKLKDYIE KHGTGGNWIA LPNKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDNIIC SLYMSIGSRW SIIAAQLPGR TDNDVKNYWN TRLKKKLLGR 120 RKDLQTCRFP SADQEANKVK LMNNDNTNSS CLRSSALERK QLHTQLHGLH KPLSLYCNPA 180 LWPNYVTVGE NIFPYQYSHM HSNLIQRDPI SPIQSDQKAT LDDLATPSNA CSQERSNRNP 240 KNEELETLLN GFASSSNSVA FDGELEQSSI KVHVDSGVHH ELNVYLNSKM GDFNGLDYQI 300 TEHDCLKDEI GAEENAIWCT DGFNWKSLSD SWDSSPIHQQ QEMFRDYEVG YDQ

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MGRAPCCDKA KVKKGPWSPD EDAKLKDYIE KHGTGGNWIA LPNKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNIIC SLYMSIGSRW SIIAAQLPGR TDNDVKNYWN TRLKKKLLGR  120
RKDLQTCRFP SADQEANKVK LMNNDNTNSS CLRSSALERK QLHTQLHGLH KPLSLYCNPA  180
LWPNYVTVGE NIFPYQYSHM HSNLIQRDPI SPIQSDQKAT LDDLATPSNA CSQERSNRNP  240
KNEELETLLN GFASSSNSVA FDGELEQSSI KVHVDSGVHH ELNVYLNSKM GDFNGLDYQI  300
TEHDCLKDEI GAEENAIWCT DGFNWKSLSD SWDSSPIHQQ QEMFRDYEVG YDQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	1e-82	MYB family protein