PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR82696.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family GATA
Protein Properties Length: 309aa    MW: 33596.6 Da    PI: 9.9014
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR82696.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.48.3e-18204238135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  RWR82696.1 204 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 238
                 99*****************************9885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    
MERTSSTSPT KRKRRRRRKK PPSPTATHPP GNSTDSSTVT AGDSCNSSSS GSDPHFSADC  60
SSDILADAHF SGDLCVPCDD IAELEWLSNF VEESFSSEDL QKLQLISGVK ARTDSGTAET  120
LESAAGNSRN NPIFRPEGPV PGKARSKRSR AAPSTWSSRL VVVSPTTWLS EPEVASNPGK  180
KMTKSAPRKR HSSEAVGGGD GRKCLHCATD KTPQWRTGPM GPKTLCNACG VRYKSGRLVP  240
EYRPAASPTF VLTKHSNSHR KVMELRRQKE LQQPQQFMHP SAVFDVVAAA AGEDYLMSHH  300
PGPDFRQLI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11116KRKRRR
21117KRKRRRR
31119KRKRRRRRK
41218KRKRRRR
51220KRKRRRRRK
61216RKRRR
71318KRKRRR
81319KRKRRRR
91420KRKRRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.18e-88GATA family protein