PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR82728.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family MYB_related
Protein Properties Length: 262aa    MW: 29125.8 Da    PI: 10.1092
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR82728.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding414.4e-1390134347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+ E+  ++ + ++lG+g+W+ I+r +  +Rt+ q+ s+ qky
       RWR82728.1  90 PWTEAEHRTFLAGLAKLGKGDWRGISRNFVRTRTATQVASHAQKY 134
                      8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    
MVRKCSHCGK KGHNSRTCSS YRRTFSGLRL FGVQLDIDSP MKKSFSMDSF PFSPSSSSRA  60
YTEEPVDKIS YGYHSDGLIG RTQQRKKGVP WTEAEHRTFL AGLAKLGKGD WRGISRNFVR  120
TRTATQVASH AQKYFLRIGS FNKKNRRSSL FDMVGNSNTD VHVTDSMSKD PSPWEFPALS  180
SFSTYHEVCK NNPLINIDSL EQEVQDNQKS KHSASSALFL VPLGMSSESS SGCVSRPSSA  240
ITKPAIALDS PNLELTIALE RQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.12e-48MYB_related family protein