PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR82839.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family bHLH
Protein Properties Length: 396aa    MW: 43417.6 Da    PI: 6.9243
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR82839.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH383e-12324369655
                 HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +++Er RR ri +++ +L+el+P+     +k  + a++L  Av+YIk+Lq
  RWR82839.1 324 SIAERVRRTRISQRMRKLQELVPNM----DKQTNTADMLDFAVDYIKDLQ 369
                 689*********************7....688*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    
MKYNSQESNY LNPSFPNYFN HVKGELHKSK VVAMASDLCN QQQQLNSSVM RYRSAPSSLL  60
ENLINGNGDG CDDFSMFSTF MSRGGRNFVS SHLYDNGEKT SAPSQSSSPQ FMAPNDRSAD  120
DVGIESSCRN IMAMDSEDVM KSSSNCSNLI RHGSSPAGLF SHMDVENGYV VMGGMGDVRG  180
GATASTSRFN NQMSPLPRPI SSEMGTEIIG PSSPDSGNLG TSNGNLRAYI SGELVLPISS  240
WEDSSLDNFT SLEGSGDTHG TIISSLNASE AQNGNVENQT SGIHQFNFPK TLSEMAAMKK  300
ILQFQDSLPC KIRAKRGCAT HPRSIAERVR RTRISQRMRK LQELVPNMDK QTNTADMLDF  360
AVDYIKDLQR QVKMLSDIRA SCICLSKQKL YTDPVV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.13e-58bHLH family protein