PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR82942.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family LBD
Protein Properties Length: 202aa    MW: 21177.2 Da    PI: 7.9313
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR82942.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.27e-302103197
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+vlr++C+++C+l+p++     +++q++++ +v+k+FG++ ++++++a+ e++r+++++sl++eA+ r+ +Pv Gavg++++++++l+q+++e+
  RWR82942.1   2 SCNGCRVLRKGCSESCILRPCLqwidtAQAQANATVFVAKFFGRAGLMSFISAVTETQRPALFQSLLFEACGRTVNPVGGAVGLLSAGKWHLCQSAVET 100
                 6*********************9999888899****************************************************************998 PP

      DUF260  95 all 97 
                 +l+
  RWR82942.1 101 VLR 103
                 876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    
MSCNGCRVLR KGCSESCILR PCLQWIDTAQ AQANATVFVA KFFGRAGLMS FISAVTETQR  60
PALFQSLLFE ACGRTVNPVG GAVGLLSAGK WHLCQSAVET VLRGGTLHPL AEISAPDTDD  120
SSEADPSYGK GFGCGVAKLH PSDLDLGLAA VPLEKCIAAP ASRKRRPSTP SMESEGSVTT  180
SFKSEGDRVA AGGDRKLLNL FG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.14e-69LBD family protein