PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR82981.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB

Protein Properties

Length: 250aa MW: 28170.9 Da PI: 10.954

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR82981.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	63.2	5.2e-20	21	66	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgrW t+Ede+l +avk++G ++W+ I +++ gR++k+c++rwq+ RWR82981.1 21 RGRWRTDEDEKLRRAVKEHGAKNWSVICTYIP-GRSAKSCRLRWQNQ 66 89****************************.**********96 PP
2	Myb_DNA-binding	40.2	8e-13	74	116	2	45
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++T eEd+ +v+ +lG++ W++Iar ++ gRt++ +k++w+ RWR82981.1 74 SPFTLEEDLEIVRHQSRLGNK-WAAIARVLNAGRTENAVKNHWN 116 589****************.*******************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence
MATSQAMTIA TGSASAIEEV RGRWRTDEDE KLRRAVKEHG AKNWSVICTY IPGRSAKSCR 60 LRWQNQLSPD VNHSPFTLEE DLEIVRHQSR LGNKWAAIAR VLNAGRTENA VKNHWNCRIR 120 KMMSSYSPPY DRRRAYHRYG YRRYHPLPLP SPLVLRSLSR RVISYGSSHP SNGGGEPHGS 180 IDLTLRLAPP GPGLRSSSLP STREMVSFVV KKEARGYFLE LRGNLQTGSN NASEGVMNRM 240 ENQAGVGRMN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50060.1	7e-41	MYB family protein