PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR83025.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

LBD

Protein Properties

Length: 107aa MW: 12346.2 Da PI: 7.4519

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR83025.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	110.9	8.9e-35	6	104	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaC +++r+C ++C++apyfp+++p++f+ +++++Ga++v +l+++p + reda++++++eA+ar++dP+yG+vg+i+++q+++ ++ ++a+++ RWR83025.1 6 PCAACEFHGRRCHENCIFAPYFPSTDPERFESINRIYGARTVGTMLQQTPVHFREDAVETMLFEARARIEDPIYGSVGIISRMQHEIVVARYKMAVMQL 104 7**************************************************************************************999988887765 PP

Sequence ? help Back to Top
Protein Sequence Length: 107 aa Download sequence
MSYRSPCAAC EFHGRRCHEN CIFAPYFPST DPERFESINR IYGARTVGTM LQQTPVHFRE 60 DAVETMLFEA RARIEDPIYG SVGIISRMQH EIVVARYKMA VMQLQIA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	7e-37	LBD family protein