PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR83132.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family M-type_MADS
Protein Properties Length: 206aa    MW: 23691.5 Da    PI: 10.222
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR83132.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.38.4e-2874123251
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                 ri+n++nrqvtfskRrng+lKKA+EL +LCda v +i+fsstgkly++ss
  RWR83132.1  74 RIDNSTNRQVTFSKRRNGLLKKAKELAILCDAVVGLIVFSSTGKLYDFSS 123
                 8***********************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    
MCLPNKEKAF KAGKSHPSKQ ESFILFCCLG CFQSISCLYR NIPRTNVVFL SNAPNPTSAK  60
RKGRMGRGKI VIRRIDNSTN RQVTFSKRRN GLLKKAKELA ILCDAVVGLI VFSSTGKLYD  120
FSSTSMKSII DRYNKSKEDH RQELNTTSEI KFWQREVASL GQQLKYLQEN HRYNLLTLTC  180
SYVKAFYVFY GCDFILSTEY MQNFLA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.13e-57MIKC_MADS family protein