PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR83223.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

TCP

Protein Properties

Length: 490aa MW: 54268.8 Da PI: 9.5325

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR83223.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	96.6	4.9e-30	134	209	3	78
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaess 78 g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++a++ai+el+ ++ ++++++ + RWR83223.1 134 GGKDRHSKVRTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAQHAIDELPPLQMPQENHVqysQ---P 209 78*************************************************************888887774321...1 PP

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence
MSLETSNLGG NCNAAKLHNT GTTWLKSLKL FYLEENCFVD ATLEGFIWQC RKSSSLFYTE 60 PSRIKIELSG RRLHQNFHSH VLMREMIRSS IEKGLPAKKE GDFNAGKNPQ EPSSSRPWSA 120 LKDPRIVRVS RTFGGKDRHS KVRTIRGLRD RRVRLSVPTA IQLYDLQDRL GLNQPSKVVD 180 WLLNAAQHAI DELPPLQMPQ ENHVQYSQPT VVSHEVTAPE APVTSLLYAN SEHLRRSGAH 240 SFTLFSGRGD VKSRNEMLGS DQTVLPKSMF WNSSDPFGDK CKGVAIEKSE WMKRNEHENQ 300 ESMGVPSAQK RTHNSLLRPS HSFLAGSLTN VSPYASYYHF GLPSNASVSH LGHGCSSQTE 360 ELHNLPSSLA VPSGPQLLVY PSGATPSLIP SYITPSIDFD PKQITNFQML GPTSQNLQPN 420 SFTASLYSTN PATRTLQFSL NPNHHHSHNS HETQSNALEK VTNGSSSAAP TSSFLNHSKA 480 ALGSNSSSFM

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence

MSLETSNLGG NCNAAKLHNT GTTWLKSLKL FYLEENCFVD ATLEGFIWQC RKSSSLFYTE  60
PSRIKIELSG RRLHQNFHSH VLMREMIRSS IEKGLPAKKE GDFNAGKNPQ EPSSSRPWSA  120
LKDPRIVRVS RTFGGKDRHS KVRTIRGLRD RRVRLSVPTA IQLYDLQDRL GLNQPSKVVD  180
WLLNAAQHAI DELPPLQMPQ ENHVQYSQPT VVSHEVTAPE APVTSLLYAN SEHLRRSGAH  240
SFTLFSGRGD VKSRNEMLGS DQTVLPKSMF WNSSDPFGDK CKGVAIEKSE WMKRNEHENQ  300
ESMGVPSAQK RTHNSLLRPS HSFLAGSLTN VSPYASYYHF GLPSNASVSH LGHGCSSQTE  360
ELHNLPSSLA VPSGPQLLVY PSGATPSLIP SYITPSIDFD PKQITNFQML GPTSQNLQPN  420
SFTASLYSTN PATRTLQFSL NPNHHHSHNS HETQSNALEK VTNGSSSAAP TSSFLNHSKA  480
ALGSNSSSFM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60970.1	2e-41	TCP family protein