PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR83413.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

C2H2

Protein Properties

Length: 258aa MW: 28037.4 Da PI: 7.1148

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR83413.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11	0.0013	118	140	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H RWR83413.1 118 YECKTCNRCFPSFQALGGHRASH 140 99**********99999998887 PP
2	zf-C2H2	13.9	0.00016	178	200	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H RWR83413.1 178 HECSICGSEFSSGQALGGHMRRH 200 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence
METSERIIVK GKRTKRQRLI SPQPATNMTS SSIVVGGDDD HSENISSSCS RGPTTSTEFC 60 GSTEEEEDMA NCLILLAQGG SPNHPNFQIG EAAAVGKLSS RKLFSEAATA MKPGFYAYEC 120 KTCNRCFPSF QALGGHRASH KKPKTSEEKK ALEEENSQMA SSSTSPTKAI PYNKSRVHEC 180 SICGSEFSSG QALGGHMRRH RTATIESQEN IRKERNVMSL DLNLPAPEED LEFPGGFAFS 240 AKQLPLMFAG SSLVDCPY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	1e-50	C2H2 family protein